Analysis of interatomic Contacts of Structural Units in PDB entry:
5G2U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G2U entry

There is 1 chain in PDB entry 5G2U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22LEU 486
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5G2U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
49 58Right-handed alpha
Helix 3
3
A
71 82Right-handed alpha
Helix 4
4
A
84 89Right-handed alpha
Helix 5
5
A
108 116Right-handed alpha
Helix 6
6
A
153 172Right-handed alpha
Helix 7
7
A
189 197Right-handed alpha
Helix 8
8
A
221 225Right-handed 310
Helix 9
9
A
226 231Right-handed alpha
Helix 10
10
A
231 236Right-handed alpha
Helix 11
11
A
236 243Right-handed alpha
Helix 12
12
A
246 276Right-handed alpha
Helix 13
13
A
280 282Right-handed 310
Helix 14
14
A
297 301Right-handed 310
Helix 15
15
A
309 314Right-handed alpha
Helix 16
16
A
337 351Right-handed alpha
Helix 17
17
A
363 369Right-handed alpha
Helix 18
18
A
409 411Right-handed 310
Helix 19
19
A
431 433Right-handed 310
Helix 20
20
A
434 452Right-handed alpha
Helix 21
21
A
455 459Right-handed 310
Helix 22
22
A
464 468Right-handed 310
Helix 23
23
A
473 477Right-handed 310
Helix 24
24
A
481 486Right-handed alpha
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There are 2 sheets in PDB entry 5G2U. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
317 320anti-parallel
Strand 3
A
284 289anti-parallel
Strand 4
A
25 31parallel
Strand 5
A
178 184parallel
Strand 6
A
119 124parallel
Strand 7
A
136 138parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 385first strand
Strand 2
A
391 398anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
412 417anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il