Analysis of interatomic Contacts of Structural Units in PDB entry:
5G2V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G2V entry

There is 1 chain in PDB entry 5G2V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27GLU 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5G2V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 44Right-handed 310
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
54 63Right-handed alpha
Helix 4
4
A
76 87Right-handed alpha
Helix 5
5
A
89 94Right-handed alpha
Helix 6
6
A
108 116Right-handed alpha
Helix 7
7
A
143 147Right-handed 310
Helix 8
8
A
167 182Right-handed alpha
Helix 9
9
A
205 209Right-handed 310
Helix 10
10
A
231 237Right-handed alpha
Helix 11
11
A
255 261Right-handed alpha
Helix 12
12
A
265 272Right-handed alpha
Helix 13
13
A
275 295Right-handed alpha
Helix 14
14
A
299 336Right-handed alpha
Helix 15
15
A
355 358Right-handed 310
Helix 16
16
A
366 371Right-handed alpha
Helix 17
17
A
396 405Right-handed alpha
Helix 18
18
A
418 423Right-handed alpha
Helix 19
19
A
490 492Right-handed 310
Helix 20
20
A
493 511Right-handed alpha
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There are 3 sheets in PDB entry 5G2V. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
154 157anti-parallel
Strand 3
A
137 141anti-parallel
Strand 4
A
119 124parallel
Strand 5
A
189 194parallel
Strand 6
A
30 36parallel
Strand 7
A
342 348parallel
Strand 8
A
374 377anti-parallel
Strand 9
A
65 67anti-parallel
Strand 10
A
386 388parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
392 393parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
451 456anti-parallel
Strand 3
A
460 467anti-parallel
Strand 4
A
471 476anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il