Analysis of interatomic Contacts of Structural Units in PDB entry:
5G3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G3S entry

There are 3 chains in PDB entry 5G3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 394
A
 GLY 396ALA 418
B
 SER 4PRO 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5G3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 26Right-handed alpha
Helix 2
2
A
27 30Right-handed 310
Helix 3
3
A
70 80Right-handed alpha
Helix 4
4
A
96 110Right-handed alpha
Helix 5
5
A
112 117Right-handed alpha
Helix 6
6
A
120 140Right-handed alpha
Helix 7
7
A
143 148Right-handed 310
Helix 8
8
A
152 162Right-handed alpha
Helix 9
9
A
166 171Right-handed 310
Helix 10
10
A
184 198Right-handed alpha
Helix 11
11
A
242 248Right-handed alpha
Helix 12
12
A
277 283Right-handed 310
Helix 13
13
A
312 324Right-handed alpha
Helix 14
14
A
325 342Right-handed alpha
Helix 15
15
A
344 348Right-handed 310
Helix 16
16
A
389 392Right-handed 310
Helix 17
17
A
397 418Right-handed alpha
Helix 18
18
B
13 26Right-handed alpha
Helix 19
19
B
70 80Right-handed alpha
Helix 20
20
B
96 110Right-handed alpha
Helix 21
21
B
112 117Right-handed alpha
Helix 22
22
B
120 126Right-handed alpha
Helix 23
23
B
130 140Right-handed alpha
Helix 24
24
B
143 148Right-handed 310
Helix 25
25
B
152 163Right-handed alpha
Helix 26
26
B
166 170Right-handed 310
Helix 27
27
B
184 198Right-handed alpha
Helix 28
28
B
242 248Right-handed alpha
Helix 29
29
B
277 283Right-handed 310
Helix 30
30
B
312 325Right-handed alpha
Helix 31
31
B
325 342Right-handed alpha
Helix 32
32
B
344 348Right-handed 310
Helix 33
33
B
389 392Right-handed 310
Helix 34
34
B
397 418Right-handed alpha
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There are 10 sheets in PDB entry 5G3S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
34 38parallel
Strand 3
A
3 10parallel
Strand 4
A
229 239parallel
Strand 5
A
385 387anti-parallel
Strand 6
A
376 378parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
34 38parallel
Strand 3
A
3 10parallel
Strand 4
A
229 239parallel
Strand 5
A
217 224anti-parallel
Strand 6
A
206 214anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
57 59anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
178 180anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
297 301anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
263 273anti-parallel
Strand 5
A
353 365anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 204first strand
Strand 2
B
34 38parallel
Strand 3
B
5 10parallel
Strand 4
B
229 239parallel
Strand 5
B
385 387anti-parallel
Strand 6
B
376 378parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 204first strand
Strand 2
B
34 38parallel
Strand 3
B
5 10parallel
Strand 4
B
229 239parallel
Strand 5
B
217 224anti-parallel
Strand 6
B
206 214anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
57 59anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
178 180anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 290first strand
Strand 2
B
297 301anti-parallel
Strand 3
B
305 311anti-parallel
Strand 4
B
264 273anti-parallel
Strand 5
B
353 364anti-parallel
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