Analysis of interatomic Contacts of Structural Units in PDB entry:
5G3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G3T entry

There are 2 chains in PDB entry 5G3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ALA 418
B
 GLN 3GLY 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 5G3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
53 55Right-handed 310
Helix 4
4
A
70 80Right-handed alpha
Helix 5
5
A
96 110Right-handed alpha
Helix 6
6
A
112 117Right-handed alpha
Helix 7
7
A
120 140Right-handed alpha
Helix 8
8
A
143 148Right-handed 310
Helix 9
9
A
152 162Right-handed alpha
Helix 10
10
A
166 171Right-handed 310
Helix 11
11
A
184 198Right-handed alpha
Helix 12
12
A
242 248Right-handed alpha
Helix 13
13
A
277 283Right-handed 310
Helix 14
14
A
312 325Right-handed alpha
Helix 15
15
A
325 342Right-handed alpha
Helix 16
16
A
344 348Right-handed 310
Helix 17
17
A
389 392Right-handed 310
Helix 18
18
A
397 418Right-handed alpha
Helix 19
19
B
13 26Right-handed alpha
Helix 20
20
B
27 30Right-handed 310
Helix 21
21
B
70 80Right-handed alpha
Helix 22
22
B
96 110Right-handed alpha
Helix 23
23
B
112 117Right-handed alpha
Helix 24
24
B
120 140Right-handed alpha
Helix 25
25
B
143 148Right-handed 310
Helix 26
26
B
152 162Right-handed alpha
Helix 27
27
B
166 171Right-handed 310
Helix 28
28
B
184 198Right-handed alpha
Helix 29
29
B
242 248Right-handed alpha
Helix 30
30
B
277 283Right-handed 310
Helix 31
31
B
312 325Right-handed alpha
Helix 32
32
B
325 342Right-handed alpha
Helix 33
33
B
344 348Right-handed 310
Helix 34
34
B
389 392Right-handed 310
Helix 35
35
B
397 418Right-handed alpha
Helix 36
36
C
13 25Right-handed alpha
Helix 37
37
C
26 30Right-handed 310
Helix 38
38
C
70 80Right-handed alpha
Helix 39
39
C
96 110Right-handed alpha
Helix 40
40
C
112 117Right-handed alpha
Helix 41
41
C
120 126Right-handed alpha
Helix 42
42
C
130 140Right-handed alpha
Helix 43
43
C
143 148Right-handed 310
Helix 44
44
C
152 161Right-handed alpha
Helix 45
45
C
166 170Right-handed 310
Helix 46
46
C
184 198Right-handed alpha
Helix 47
47
C
242 248Right-handed alpha
Helix 48
48
C
277 283Right-handed 310
Helix 49
49
C
312 324Right-handed alpha
Helix 50
50
C
325 342Right-handed alpha
Helix 51
51
C
344 348Right-handed 310
Helix 52
52
C
388 392Right-handed 310
Helix 53
53
C
397 418Right-handed alpha
Helix 54
54
D
13 25Right-handed alpha
Helix 55
55
D
26 30Right-handed 310
Helix 56
56
D
53 55Right-handed 310
Helix 57
57
D
70 80Right-handed alpha
Helix 58
58
D
96 110Right-handed alpha
Helix 59
59
D
112 117Right-handed alpha
Helix 60
60
D
120 140Right-handed alpha
Helix 61
61
D
143 148Right-handed 310
Helix 62
62
D
152 161Right-handed alpha
Helix 63
63
D
166 170Right-handed 310
Helix 64
64
D
184 198Right-handed alpha
Helix 65
65
D
242 248Right-handed alpha
Helix 66
66
D
277 283Right-handed 310
Helix 67
67
D
312 324Right-handed alpha
Helix 68
68
D
325 342Right-handed alpha
Helix 69
69
D
344 348Right-handed 310
Helix 70
70
D
388 392Right-handed 310
Helix 71
71
D
397 418Right-handed alpha
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There are 20 sheets in PDB entry 5G3T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
34 38parallel
Strand 3
A
4 10parallel
Strand 4
A
229 239parallel
Strand 5
A
385 387anti-parallel
Strand 6
A
376 378parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
34 38parallel
Strand 3
A
4 10parallel
Strand 4
A
229 239parallel
Strand 5
A
217 224anti-parallel
Strand 6
A
206 214anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
56 59anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
178 180anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
297 301anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
262 273anti-parallel
Strand 5
A
353 366anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 204first strand
Strand 2
B
34 38parallel
Strand 3
B
4 10parallel
Strand 4
B
229 239parallel
Strand 5
B
385 387anti-parallel
Strand 6
B
376 378parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 204first strand
Strand 2
B
34 38parallel
Strand 3
B
4 10parallel
Strand 4
B
229 239parallel
Strand 5
B
217 224anti-parallel
Strand 6
B
206 214anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
56 59anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
178 180anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 290first strand
Strand 2
B
297 301anti-parallel
Strand 3
B
305 311anti-parallel
Strand 4
B
262 273anti-parallel
Strand 5
B
353 366anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 204first strand
Strand 2
C
34 38parallel
Strand 3
C
5 10parallel
Strand 4
C
229 239parallel
Strand 5
C
385 386anti-parallel
Strand 6
C
377 378parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 204first strand
Strand 2
C
34 38parallel
Strand 3
C
5 10parallel
Strand 4
C
229 239parallel
Strand 5
C
217 224anti-parallel
Strand 6
C
206 214anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 52first strand
Strand 2
C
56 59anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 86first strand
Strand 2
C
178 180anti-parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
288 290first strand
Strand 2
C
297 301anti-parallel
Strand 3
C
305 311anti-parallel
Strand 4
C
262 273anti-parallel
Strand 5
C
353 366anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
201 204first strand
Strand 2
D
34 38parallel
Strand 3
D
4 10parallel
Strand 4
D
229 239parallel
Strand 5
D
385 386anti-parallel
Strand 6
D
377 378parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
201 204first strand
Strand 2
D
34 38parallel
Strand 3
D
4 10parallel
Strand 4
D
229 239parallel
Strand 5
D
217 224anti-parallel
Strand 6
D
206 214anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 52first strand
Strand 2
D
56 59anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 86first strand
Strand 2
D
178 180anti-parallel
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There are 5 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
288 290first strand
Strand 2
D
297 301anti-parallel
Strand 3
D
305 311anti-parallel
Strand 4
D
262 273anti-parallel
Strand 5
D
353 366anti-parallel
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