Analysis of interatomic Contacts of Structural Units in PDB entry:
5G44


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G44 entry

There are 2 chains in PDB entry 5G44 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 265GLY 509
C
 LYS 686SER 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5G44. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
266 283Right-handed alpha
Helix 2
2
A
288 295Right-handed alpha
Helix 3
3
A
301 310Right-handed alpha
Helix 4
4
A
312 337Right-handed alpha
Helix 5
5
A
340 344Right-handed 310
Helix 6
6
A
345 365Right-handed alpha
Helix 7
7
A
384 392Right-handed 310
Helix 8
8
A
393 409Right-handed alpha
Helix 9
9
A
413 426Right-handed alpha
Helix 10
10
A
435 457Right-handed alpha
Helix 11
11
A
459 466Right-handed 310
Helix 12
12
A
470 490Right-handed alpha
Helix 13
13
A
490 498Right-handed alpha
Helix 14
14
A
499 507Right-handed alpha
Helix 15
15
C
687 696Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 5G44.

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
375 378anti-parallel
Strand 3
A
381 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il