Analysis of interatomic Contacts of Structural Units in PDB entry:
5G47

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5G47 entry

There are 3 chains in PDB entry 5G47 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 563	VAL 996
B	CYS 563	VAL 996
C	CYS 563	VAL 996

There are 17 helices in PDB entry 5G47. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	693	697	Right-handed 310
Helix 2	2	A	714	717	Right-handed 310
Helix 3	3	A	811	817	Right-handed alpha
Helix 4	4	A	826	828	Right-handed 310
Helix 5	5	A	847	855	Right-handed alpha
Helix 6	6	A	882	884	Right-handed 310
Helix 7	7	B	693	697	Right-handed 310
Helix 8	8	B	811	818	Right-handed alpha
Helix 9	9	B	826	828	Right-handed 310
Helix 10	10	B	847	855	Right-handed alpha
Helix 11	11	B	882	884	Right-handed 310
Helix 12	12	C	693	697	Right-handed 310
Helix 13	13	C	714	717	Right-handed 310
Helix 14	14	C	811	818	Right-handed alpha
Helix 15	15	C	826	828	Right-handed 310
Helix 16	16	C	847	855	Right-handed alpha
Helix 17	17	C	882	884	Right-handed 310

There are 35 sheets in PDB entry 5G47. Click on sheet of interest to get list of strands forming it: AA, AB, BA, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, BB, BC, CA, BD, BE, BF, BG, BH, BI, BJ, CB, CC, CD, CE, CF, CG,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	757	first strand
Strand 2	A	760	769	anti-parallel
Strand 3	A	886	894	anti-parallel
Strand 4	A	587	597	anti-parallel
Strand 5	A	569	576	anti-parallel
Strand 6	B	898	902	parallel
Strand 7	B	602	608	anti-parallel
Strand 8	B	615	631	anti-parallel
Strand 9	B	876	880	parallel
Strand 10	B	864	868	parallel
Strand 11	B	859	861	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	757	first strand
Strand 2	A	760	769	anti-parallel
Strand 3	A	886	894	anti-parallel
Strand 4	A	587	597	anti-parallel
Strand 5	A	569	576	anti-parallel
Strand 6	B	898	902	parallel
Strand 7	B	602	608	anti-parallel
Strand 8	B	615	631	anti-parallel
Strand 9	B	719	737	anti-parallel
Strand 10	B	743	746	parallel

Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	638	first strand
Strand 2	B	719	737	parallel

Back to list of sheets
Back to top of page

There are 11 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	757	first strand
Strand 2	A	760	769	anti-parallel
Strand 3	A	886	894	anti-parallel
Strand 4	A	587	597	anti-parallel
Strand 5	A	569	576	anti-parallel
Strand 6	B	898	902	parallel
Strand 7	B	602	608	anti-parallel
Strand 8	B	615	631	anti-parallel
Strand 9	B	719	737	anti-parallel
Strand 10	B	777	782	anti-parallel
Strand 11	B	788	791	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	757	first strand
Strand 2	A	760	769	anti-parallel
Strand 3	A	886	894	anti-parallel
Strand 4	A	587	597	anti-parallel
Strand 5	A	569	576	anti-parallel
Strand 6	B	898	902	parallel
Strand 7	B	602	608	anti-parallel
Strand 8	B	615	631	anti-parallel
Strand 9	B	719	737	anti-parallel
Strand 10	B	635	638	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	635	638	first strand
Strand 2	A	719	737	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	746	first strand
Strand 2	A	719	737	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	791	first strand
Strand 2	A	777	782	anti-parallel
Strand 3	A	719	737	anti-parallel
Strand 4	A	743	746	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	791	first strand
Strand 2	A	777	782	anti-parallel
Strand 3	A	719	737	anti-parallel
Strand 4	A	635	638	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	861	first strand
Strand 2	A	864	868	parallel
Strand 3	A	876	880	parallel
Strand 4	A	615	631	parallel
Strand 5	A	719	737	anti-parallel
Strand 6	A	743	746	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	791	first strand
Strand 2	A	777	782	anti-parallel
Strand 3	A	719	737	anti-parallel
Strand 4	A	615	631	anti-parallel
Strand 5	A	876	880	parallel
Strand 6	A	864	868	parallel
Strand 7	A	859	861	parallel

Back to list of sheets
Back to top of page

There are 11 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	861	first strand
Strand 2	A	864	868	parallel
Strand 3	A	876	880	parallel
Strand 4	A	615	631	parallel
Strand 5	A	602	608	anti-parallel
Strand 6	A	898	902	anti-parallel
Strand 7	C	569	576	parallel
Strand 8	C	586	597	anti-parallel
Strand 9	C	886	894	anti-parallel
Strand 10	C	760	769	anti-parallel
Strand 11	C	753	757	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	861	first strand
Strand 2	A	864	868	parallel
Strand 3	A	876	880	parallel
Strand 4	A	615	631	parallel
Strand 5	A	719	737	anti-parallel
Strand 6	A	777	782	anti-parallel
Strand 7	A	788	791	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	861	first strand
Strand 2	A	864	868	parallel
Strand 3	A	876	880	parallel
Strand 4	A	615	631	parallel
Strand 5	A	719	737	anti-parallel
Strand 6	A	635	638	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	649	first strand
Strand 2	A	705	713	anti-parallel
Strand 3	A	683	689	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	808	809	first strand
Strand 2	A	823	824	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	835	first strand
Strand 2	A	838	843	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	916	first strand
Strand 2	A	925	933	anti-parallel
Strand 3	A	955	963	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	947	952	first strand
Strand 2	A	937	942	anti-parallel
Strand 3	A	969	978	anti-parallel
Strand 4	A	981	990	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	757	first strand
Strand 2	B	760	769	anti-parallel
Strand 3	B	886	895	anti-parallel
Strand 4	B	586	597	anti-parallel
Strand 5	B	569	576	anti-parallel
Strand 6	C	898	902	parallel
Strand 7	C	602	608	anti-parallel
Strand 8	C	615	631	anti-parallel
Strand 9	C	876	880	parallel
Strand 10	C	864	868	parallel
Strand 11	C	859	861	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	757	first strand
Strand 2	B	760	769	anti-parallel
Strand 3	B	886	895	anti-parallel
Strand 4	B	586	597	anti-parallel
Strand 5	B	569	576	anti-parallel
Strand 6	C	898	902	parallel
Strand 7	C	602	608	anti-parallel
Strand 8	C	615	631	anti-parallel
Strand 9	C	719	737	anti-parallel
Strand 10	C	743	746	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	635	638	first strand
Strand 2	C	719	737	parallel

Back to list of sheets
Back to top of page

There are 11 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	757	first strand
Strand 2	B	760	769	anti-parallel
Strand 3	B	886	895	anti-parallel
Strand 4	B	586	597	anti-parallel
Strand 5	B	569	576	anti-parallel
Strand 6	C	898	902	parallel
Strand 7	C	602	608	anti-parallel
Strand 8	C	615	631	anti-parallel
Strand 9	C	719	737	anti-parallel
Strand 10	C	777	782	anti-parallel
Strand 11	C	788	791	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	757	first strand
Strand 2	B	760	769	anti-parallel
Strand 3	B	886	895	anti-parallel
Strand 4	B	586	597	anti-parallel
Strand 5	B	569	576	anti-parallel
Strand 6	C	898	902	parallel
Strand 7	C	602	608	anti-parallel
Strand 8	C	615	631	anti-parallel
Strand 9	C	719	737	anti-parallel
Strand 10	C	635	638	parallel

Back to list of sheets
Back to top of page

There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	649	first strand
Strand 2	B	705	713	anti-parallel
Strand 3	B	683	689	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	808	809	first strand
Strand 2	B	823	824	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	834	first strand
Strand 2	B	839	843	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	908	916	first strand
Strand 2	B	925	933	anti-parallel
Strand 3	B	955	963	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	947	952	first strand
Strand 2	B	937	942	anti-parallel
Strand 3	B	969	978	anti-parallel
Strand 4	B	981	990	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	641	649	first strand
Strand 2	C	705	713	anti-parallel
Strand 3	C	683	689	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	653	first strand
Strand 2	C	656	657	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	808	809	first strand
Strand 2	C	823	824	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	832	first strand
Strand 2	C	841	843	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	908	916	first strand
Strand 2	C	925	933	anti-parallel
Strand 3	C	956	963	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	947	952	first strand
Strand 2	C	937	942	anti-parallel
Strand 3	C	969	978	anti-parallel
Strand 4	C	981	990	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5G47

Analysis of interatomic Contacts of Structural Units in PDB entry:
5G47