Analysis of interatomic Contacts of Structural Units in PDB entry:
5G4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G4A entry

There are 9 chains in PDB entry 5G4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 10
A
 GLN 12ALA 16
A
 ARG 18ILE 54
A
 GLN 56TRP 99
A
 PHE 101THR 262
B
 THR 2GLN 10
B
 GLN 12ALA 16
B
 ARG 18ILE 54
B
 GLN 56LYS 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5G4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 8Right-handed 310
Helix 2
2
A
9 25Right-handed alpha
Helix 3
3
A
35 40Right-handed alpha
Helix 4
4
A
59 74Right-handed alpha
Helix 5
5
A
94 96Right-handed 310
Helix 6
6
A
110 112Right-handed 310
Helix 7
7
A
113 118Right-handed alpha
Helix 8
8
A
129 141Right-handed alpha
Helix 9
9
A
149 154Right-handed alpha
Helix 10
10
A
158 168Right-handed alpha
Helix 11
11
A
169 172Right-handed 310
Helix 12
12
A
175 180Right-handed alpha
Helix 13
13
A
182 200Right-handed alpha
Helix 14
14
A
204 213Right-handed alpha
Helix 15
15
A
214 216Right-handed 310
Helix 16
16
A
217 232Right-handed alpha
Helix 17
17
A
238 257Right-handed alpha
Helix 18
18
B
6 8Right-handed 310
Helix 19
19
B
9 25Right-handed alpha
Helix 20
20
B
35 40Right-handed alpha
Helix 21
21
B
59 74Right-handed alpha
Helix 22
22
B
94 96Right-handed 310
Helix 23
23
B
110 112Right-handed 310
Helix 24
24
B
113 118Right-handed alpha
Helix 25
25
B
129 141Right-handed alpha
Helix 26
26
B
149 154Right-handed alpha
Helix 27
27
B
158 168Right-handed alpha
Helix 28
28
B
169 172Right-handed 310
Helix 29
29
B
175 180Right-handed alpha
Helix 30
30
B
182 200Right-handed alpha
Helix 31
31
B
204 213Right-handed alpha
Helix 32
32
B
214 216Right-handed 310
Helix 33
33
B
217 232Right-handed alpha
Helix 34
34
B
238 257Right-handed alpha
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There are 4 sheets in PDB entry 5G4A. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
86 92anti-parallel
Strand 3
A
48 54parallel
Strand 4
A
28 34anti-parallel
Strand 5
A
143 146anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
126 127anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
86 92anti-parallel
Strand 3
B
48 54parallel
Strand 4
B
28 34anti-parallel
Strand 5
B
143 146anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 105first strand
Strand 2
B
126 127anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il