Analysis of interatomic Contacts of Structural Units in PDB entry:
5G4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G4J entry

There are 2 chains in PDB entry 5G4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 18GLN 440
B
 ASP 18PRO 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5G4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 25Right-handed alpha
Helix 2
2
A
71 83Right-handed alpha
Helix 3
3
A
93 105Right-handed alpha
Helix 4
4
A
119 136Right-handed alpha
Helix 5
5
A
151 156Right-handed alpha
Helix 6
6
A
183 185Right-handed 310
Helix 7
7
A
186 208Right-handed alpha
Helix 8
8
A
232 244Right-handed alpha
Helix 9
9
A
265 270Right-handed 310
Helix 10
10
A
280 285Right-handed 310
Helix 11
11
A
296 306Right-handed alpha
Helix 12
12
A
315 332Right-handed alpha
Helix 13
13
A
333 356Right-handed alpha
Helix 14
14
A
383 397Right-handed alpha
Helix 15
15
A
420 437Right-handed alpha
Helix 16
16
B
18 25Right-handed alpha
Helix 17
17
B
71 83Right-handed alpha
Helix 18
18
B
93 105Right-handed alpha
Helix 19
19
B
119 136Right-handed alpha
Helix 20
20
B
151 156Right-handed alpha
Helix 21
21
B
183 185Right-handed 310
Helix 22
22
B
186 208Right-handed alpha
Helix 23
23
B
232 244Right-handed alpha
Helix 24
24
B
265 270Right-handed 310
Helix 25
25
B
280 285Right-handed 310
Helix 26
26
B
295 306Right-handed alpha
Helix 27
27
B
315 332Right-handed alpha
Helix 28
28
B
333 356Right-handed alpha
Helix 29
29
B
383 397Right-handed alpha
Helix 30
30
B
420 437Right-handed alpha
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There are 6 sheets in PDB entry 5G4J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
56 59anti-parallel
Strand 4
A
399 400parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
290 295anti-parallel
Strand 3
A
276 279anti-parallel
Strand 4
A
247 251parallel
Strand 5
A
214 217parallel
Strand 6
A
140 143parallel
Strand 7
A
171 174parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 365first strand
Strand 2
A
368 373anti-parallel
Strand 3
A
410 413anti-parallel
Strand 4
A
402 404anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
48 51anti-parallel
Strand 3
B
56 59anti-parallel
Strand 4
B
399 400parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
290 294anti-parallel
Strand 3
B
276 279anti-parallel
Strand 4
B
247 251parallel
Strand 5
B
214 217parallel
Strand 6
B
140 143parallel
Strand 7
B
171 174parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 365first strand
Strand 2
B
368 373anti-parallel
Strand 3
B
410 413anti-parallel
Strand 4
B
402 404anti-parallel
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