Analysis of interatomic Contacts of Structural Units in PDB entry:
5G4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G4P entry

There are 2 chains in PDB entry 5G4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6SER 189
E
 LYS 7ALA 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5G4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 19Right-handed alpha
Helix 2
AA2
A
23 38Right-handed alpha
Helix 3
AA3
A
45 54Right-handed alpha
Helix 4
AA4
A
57 73Right-handed alpha
Helix 5
AA5
A
82 95Right-handed alpha
Helix 6
AA6
A
96 109Right-handed alpha
Helix 7
AA7
A
118 133Right-handed alpha
Helix 8
AA8
A
144 154Right-handed alpha
Helix 9
AA9
A
165 174Right-handed alpha
Helix 10
AB1
A
176 184Right-handed alpha
Helix 11
AB2
E
9 20Right-handed alpha
Helix 12
AB3
E
23 38Right-handed alpha
Helix 13
AB4
E
44 53Right-handed alpha
Helix 14
AB5
E
61 73Right-handed alpha
Helix 15
AB6
E
81 95Right-handed alpha
Helix 16
AB7
E
96 109Right-handed alpha
Helix 17
AB8
E
118 133Right-handed alpha
Helix 18
AB9
E
144 157Right-handed alpha
Helix 19
AC1
E
166 174Right-handed alpha
Helix 20
AC2
E
176 184Right-handed alpha
Helix 21
AC3
E
185 190Right-handed 310
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There are 3 sheets in PDB entry 5G4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
79 81anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
163 164anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
115 117first strand
Strand 2
E
163 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il