Analysis of interatomic Contacts of Structural Units in PDB entry:
5G4W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G4W entry

There is 1 chain in PDB entry 5G4W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5G4W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
57 60Right-handed 310
Helix 4
4
A
61 71Right-handed alpha
Helix 5
5
A
84 94Right-handed alpha
Helix 6
6
A
102 108Right-handed alpha
Helix 7
7
A
108 120Right-handed alpha
Helix 8
8
A
152 161Right-handed alpha
Helix 9
9
A
162 164Right-handed 310
Helix 10
10
A
183 194Right-handed alpha
Helix 11
11
A
207 213Right-handed alpha
Helix 12
12
A
225 230Right-handed alpha
Helix 13
13
A
234 244Right-handed alpha
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There are 2 sheets in PDB entry 5G4W. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
221 224parallel
Strand 3
A
198 202parallel
Strand 4
A
167 172parallel
Strand 5
A
124 132parallel
Strand 6
A
98 101parallel
Strand 7
A
76 79parallel
Strand 8
A
46 50parallel
Strand 9
A
2 8first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
25 26anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il