Analysis of interatomic Contacts of Structural Units in PDB entry:
5G52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G52 entry

There are 3 chains in PDB entry 5G52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1VAL 253
B
 MET 1ALA 251
C
 ASN 2LEU 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5G52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
91 96Right-handed alpha
Helix 2
2
A
245 248Right-handed 310
Helix 3
3
B
42 48Right-handed alpha
Helix 4
4
B
55 60Right-handed alpha
Helix 5
5
B
87 95Right-handed alpha
Helix 6
6
B
99 103Right-handed 310
Helix 7
7
B
106 112Right-handed alpha
Helix 8
8
B
154 160Right-handed alpha
Helix 9
9
B
241 245Right-handed 310
Helix 10
10
C
54 59Right-handed alpha
Helix 11
11
C
105 110Right-handed alpha
Helix 12
12
C
147 151Right-handed 310
Helix 13
13
C
154 159Right-handed alpha
Helix 14
14
C
279 283Right-handed 310
Helix 15
15
C
316 320Right-handed 310
Helix 16
16
C
347 359Right-handed alpha
Helix 17
17
C
366 371Right-handed alpha
Helix 18
18
C
376 379Right-handed 310
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There are 13 sheets in PDB entry 5G52. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, CE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
C
174 178parallel
Strand 3
C
121 127anti-parallel
Strand 4
C
224 232anti-parallel
Strand 5
C
63 70anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
220 227anti-parallel
Strand 3
A
106 110anti-parallel
Strand 4
A
170 172anti-parallel
Strand 5
C
31 32parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
201 205anti-parallel
Strand 3
A
120 123anti-parallel
Strand 4
A
157 160anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
25 26anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
225 230anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
173 175anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
187 188anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 167first strand
Strand 2
B
134 140anti-parallel
Strand 3
B
204 211anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 168first strand
Strand 2
C
135 143anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 207first strand
Strand 2
C
135 143anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 212first strand
Strand 2
C
135 143anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
272 274first strand
Strand 2
C
286 288anti-parallel
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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 345first strand
Strand 2
C
329 334anti-parallel
Strand 3
C
308 314anti-parallel
Strand 4
C
391 397anti-parallel
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