Analysis of interatomic Contacts of Structural Units in PDB entry:
5G53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G53 entry

There are 4 chains in PDB entry 5G53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6TYR 312
B
 SER 6SER 305
C
 THR 40LEU 394
D
 ALA 39LEU 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 5G53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 34Right-handed alpha
Helix 2
2
A
40 58Right-handed alpha
Helix 3
3
A
58 68Right-handed alpha
Helix 4
4
A
73 108Right-handed alpha
Helix 5
5
A
111 116Right-handed alpha
Helix 6
6
A
117 137Right-handed alpha
Helix 7
7
A
138 142Right-handed 310
Helix 8
8
A
167 172Right-handed alpha
Helix 9
9
A
173 180Right-handed alpha
Helix 10
10
A
180 186Right-handed alpha
Helix 11
11
A
186 211Right-handed alpha
Helix 12
12
A
224 259Right-handed alpha
Helix 13
13
A
266 279Right-handed alpha
Helix 14
14
A
279 290Right-handed alpha
Helix 15
15
A
292 311Right-handed alpha
Helix 16
16
B
6 34Right-handed alpha
Helix 17
17
B
40 58Right-handed alpha
Helix 18
18
B
58 68Right-handed alpha
Helix 19
19
B
73 108Right-handed alpha
Helix 20
20
B
111 116Right-handed alpha
Helix 21
21
B
117 137Right-handed alpha
Helix 22
22
B
138 142Right-handed 310
Helix 23
23
B
150 157Right-handed alpha
Helix 24
24
B
167 172Right-handed alpha
Helix 25
25
B
173 180Right-handed alpha
Helix 26
26
B
180 186Right-handed alpha
Helix 27
27
B
186 207Right-handed alpha
Helix 28
28
B
224 259Right-handed alpha
Helix 29
29
B
266 279Right-handed alpha
Helix 30
30
B
279 290Right-handed alpha
Helix 31
31
B
292 305Right-handed alpha
Helix 32
32
C
52 61Right-handed alpha
Helix 33
33
C
230 236Right-handed alpha
Helix 34
34
C
254 279Right-handed alpha
Helix 35
35
C
293 304Right-handed alpha
Helix 36
36
C
307 312Right-handed alpha
Helix 37
37
C
313 318Right-handed 310
Helix 38
38
C
331 352Right-handed alpha
Helix 39
39
C
370 391Right-handed alpha
Helix 40
40
D
52 61Right-handed alpha
Helix 41
41
D
254 279Right-handed alpha
Helix 42
42
D
293 304Right-handed alpha
Helix 43
43
D
307 312Right-handed alpha
Helix 44
44
D
313 318Right-handed 310
Helix 45
45
D
331 352Right-handed alpha
Helix 46
46
D
370 391Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5G53. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
164 165anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 214first strand
Strand 2
C
217 223anti-parallel
Strand 3
C
41 47parallel
Strand 4
C
243 249parallel
Strand 5
C
286 292parallel
Strand 6
C
359 363parallel
Back to list of sheets
Back to top of page

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 214first strand
Strand 2
D
217 223anti-parallel
Strand 3
D
41 47parallel
Strand 4
D
243 249parallel
Strand 5
D
287 292parallel
Strand 6
D
359 363parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il