Analysis of interatomic Contacts of Structural Units in PDB entry:
5G56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G56 entry

There is 1 chain in PDB entry 5G56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 36LYS 742
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 5G56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 79Right-handed alpha
Helix 2
2
A
80 85Right-handed 310
Helix 3
3
A
111 125Right-handed alpha
Helix 4
4
A
143 159Right-handed alpha
Helix 5
5
A
188 204Right-handed alpha
Helix 6
6
A
218 238Right-handed alpha
Helix 7
7
A
257 271Right-handed alpha
Helix 8
8
A
293 304Right-handed alpha
Helix 9
9
A
324 327Right-handed 310
Helix 10
10
A
328 336Right-handed alpha
Helix 11
11
A
354 358Right-handed 310
Helix 12
12
A
379 381Right-handed 310
Helix 13
13
A
554 557Right-handed 310
Helix 14
14
A
595 598Right-handed 310
Helix 15
15
A
639 642Right-handed 310
Back to top of page

There are 18 sheets in PDB entry 5G56. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
52 53anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
307 308parallel
Back to list of sheets
Back to top of page

There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
88 95parallel
Strand 3
A
128 134parallel
Strand 4
A
164 167parallel
Strand 5
A
209 214parallel
Strand 6
A
248 253parallel
Strand 7
A
275 279parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
320 321parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
430 437parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
430 437anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
455 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
455 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
370 371anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 377first strand
Strand 2
A
507 515anti-parallel
Strand 3
A
441 450anti-parallel
Strand 4
A
481 490anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
420 422anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 530first strand
Strand 2
A
559 563anti-parallel
Strand 3
A
568 573anti-parallel
Strand 4
A
600 604anti-parallel
Strand 5
A
610 614anti-parallel
Strand 6
A
644 647anti-parallel
Strand 7
A
524 530anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 540first strand
Strand 2
A
545 549anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 582first strand
Strand 2
A
586 589anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 624first strand
Strand 2
A
627 634anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 701first strand
Strand 2
A
681 687anti-parallel
Strand 3
A
718 725anti-parallel
Strand 4
A
728 729parallel
Back to list of sheets
Back to top of page

There are 7 strands in AQ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
695 701first strand
Strand 2
A
681 687anti-parallel
Strand 3
A
718 725anti-parallel
Strand 4
A
736 739anti-parallel
Strand 5
A
656 662parallel
Strand 6
A
669 674anti-parallel
Strand 7
A
705 708anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 729first strand
Strand 2
A
718 725parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il