Analysis of interatomic Contacts of Structural Units in PDB entry:
5G5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G5H entry

There are 4 chains in PDB entry 5G5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 53GLY 225
B
 MET 1ALA 316
C
 MET 1ARG 394
C
 PHE 396ASP 730
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5G5H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 88Right-handed alpha
Helix 2
2
A
119 121Right-handed 310
Helix 3
3
A
123 127Right-handed 310
Helix 4
4
A
133 138Right-handed alpha
Helix 5
5
A
144 154Right-handed alpha
Helix 6
6
A
161 178Right-handed alpha
Helix 7
7
A
195 203Right-handed alpha
Helix 8
8
A
212 225Right-handed alpha
Helix 9
9
B
11 22Right-handed alpha
Helix 10
10
B
33 40Right-handed alpha
Helix 11
11
B
74 81Right-handed alpha
Helix 12
12
B
81 88Right-handed alpha
Helix 13
13
B
88 98Right-handed alpha
Helix 14
14
B
100 107Right-handed alpha
Helix 15
15
B
108 114Right-handed alpha
Helix 16
16
B
119 124Right-handed alpha
Helix 17
17
B
164 172Right-handed alpha
Helix 18
18
B
191 193Right-handed 310
Helix 19
19
B
268 273Right-handed alpha
Helix 20
20
B
274 277Right-handed 310
Helix 21
21
B
278 287Right-handed alpha
Helix 22
22
B
297 316Right-handed alpha
Helix 23
23
C
10 15Right-handed 310
Helix 24
24
C
26 31Right-handed alpha
Helix 25
25
C
68 74Right-handed alpha
Helix 26
26
C
83 87Right-handed alpha
Helix 27
27
C
119 128Right-handed alpha
Helix 28
28
C
142 148Right-handed alpha
Helix 29
29
C
164 172Right-handed alpha
Helix 30
30
C
212 225Right-handed alpha
Helix 31
31
C
227 229Right-handed 310
Helix 32
32
C
249 262Right-handed alpha
Helix 33
33
C
271 273Right-handed 310
Helix 34
34
C
274 279Right-handed alpha
Helix 35
35
C
320 325Right-handed 310
Helix 36
36
C
353 373Right-handed alpha
Helix 37
37
C
375 383Right-handed alpha
Helix 38
38
C
400 413Right-handed alpha
Helix 39
39
C
414 417Right-handed 310
Helix 40
40
C
471 485Right-handed alpha
Helix 41
41
C
487 489Right-handed 310
Helix 42
42
C
510 534Right-handed alpha
Helix 43
43
C
557 561Right-handed alpha
Helix 44
44
C
576 581Right-handed alpha
Helix 45
45
C
618 639Right-handed alpha
Helix 46
46
C
663 667Right-handed 310
Helix 47
47
C
697 711Right-handed alpha
Helix 48
48
C
720 724Right-handed 310
Helix 49
49
C
724 728Right-handed 310
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There are 11 sheets in PDB entry 5G5H. Click on sheet of interest to get list of strands forming it: AA, BA, BB, BC, CA, CB, CC, CD, CE, CF, CG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 77first strand
Strand 2
A
60 67anti-parallel
Strand 3
A
130 132parallel
Strand 4
A
108 111anti-parallel
Strand 5
A
114 117anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
47 50parallel
Strand 3
B
25 28parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
67 70anti-parallel
Strand 3
B
212 218anti-parallel
Strand 4
B
175 179anti-parallel
Strand 5
B
185 189anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 231first strand
Strand 2
B
242 248anti-parallel
Strand 3
B
254 259anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
566 574parallel
Strand 3
C
447 453anti-parallel
Strand 4
C
459 462anti-parallel
Strand 5
C
491 494parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 82first strand
Strand 2
C
111 117anti-parallel
Strand 3
C
49 55anti-parallel
Strand 4
C
266 269parallel
Strand 5
C
194 200anti-parallel
Strand 6
C
203 208anti-parallel
Strand 7
C
231 234parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 105first strand
Strand 2
C
61 67anti-parallel
Strand 3
C
131 136anti-parallel
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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
331 340anti-parallel
Strand 3
C
299 310parallel
Strand 4
C
285 293anti-parallel
Strand 5
C
174 182anti-parallel
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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
425 426first strand
Strand 2
C
429 441anti-parallel
Strand 3
C
584 596anti-parallel
Strand 4
C
602 612anti-parallel
Strand 5
C
669 674parallel
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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
542 544first strand
Strand 2
C
547 550anti-parallel
Strand 3
C
553 556anti-parallel
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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
644 645first strand
Strand 2
C
650 651anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il