Analysis of interatomic Contacts of Structural Units in PDB entry:
5G5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G5M entry

There are 2 chains in PDB entry 5G5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26GLY 288
B
 VAL 25GLY 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5G5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 40Right-handed 310
Helix 2
2
A
84 95Right-handed alpha
Helix 3
3
A
120 136Right-handed alpha
Helix 4
4
A
137 140Right-handed 310
Helix 5
5
A
149 162Right-handed alpha
Helix 6
6
A
176 189Right-handed alpha
Helix 7
7
A
192 200Right-handed alpha
Helix 8
8
A
201 203Right-handed 310
Helix 9
9
A
214 220Right-handed 310
Helix 10
10
A
237 249Right-handed alpha
Helix 11
11
A
266 271Right-handed alpha
Helix 12
12
A
271 288Right-handed alpha
Helix 13
13
B
35 40Right-handed 310
Helix 14
14
B
84 96Right-handed alpha
Helix 15
15
B
120 136Right-handed alpha
Helix 16
16
B
137 140Right-handed 310
Helix 17
17
B
149 162Right-handed alpha
Helix 18
18
B
176 186Right-handed alpha
Helix 19
19
B
192 200Right-handed alpha
Helix 20
20
B
201 204Right-handed 310
Helix 21
21
B
213 220Right-handed 310
Helix 22
22
B
237 249Right-handed alpha
Helix 23
23
B
266 271Right-handed alpha
Helix 24
24
B
271 288Right-handed alpha
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There are 2 sheets in PDB entry 5G5M. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
55 61anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
67 72parallel
Strand 5
A
142 148parallel
Strand 6
A
165 171parallel
Strand 7
A
225 230parallel
Strand 8
A
255 260parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
55 61anti-parallel
Strand 3
B
98 102anti-parallel
Strand 4
B
67 72parallel
Strand 5
B
142 148parallel
Strand 6
B
165 171parallel
Strand 7
B
225 230parallel
Strand 8
B
255 260parallel
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