Analysis of interatomic Contacts of Structural Units in PDB entry:
5G5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G5N entry

There are 3 chains in PDB entry 5G5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 29ALA 373
B
 SER 26ALA 373
C
 SER 26ALA 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5G5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 44Right-handed alpha
Helix 2
2
A
118 122Right-handed 310
Helix 3
3
A
330 334Right-handed 310
Helix 4
4
A
353 355Right-handed 310
Helix 5
5
B
36 44Right-handed alpha
Helix 6
6
B
116 122Right-handed 310
Helix 7
7
B
330 334Right-handed 310
Helix 8
8
B
353 355Right-handed 310
Helix 9
9
C
36 44Right-handed alpha
Helix 10
10
C
118 122Right-handed 310
Helix 11
11
C
330 334Right-handed 310
Helix 12
12
C
353 355Right-handed 310
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There are 15 sheets in PDB entry 5G5N. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
46 49parallel
Strand 3
A
67 69parallel
Strand 4
A
96 99parallel
Strand 5
A
132 135parallel
Strand 6
A
165 168parallel
Strand 7
A
189 191parallel
Strand 8
A
210 212parallel
Strand 9
A
244 246parallel
Strand 10
A
287 289parallel
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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
74 76parallel
Strand 3
A
102 104parallel
Strand 4
A
138 140parallel
Strand 5
A
171 173parallel
Strand 6
A
194 196parallel
Strand 7
A
215 217parallel
Strand 8
A
249 251parallel
Strand 9
A
292 294parallel
Strand 10
A
315 317parallel
Strand 11
A
342 343parallel
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There are 12 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
84 87parallel
Strand 3
A
125 128parallel
Strand 4
A
145 150parallel
Strand 5
A
177 181parallel
Strand 6
A
200 204parallel
Strand 7
A
221 226parallel
Strand 8
A
276 279parallel
Strand 9
A
298 302parallel
Strand 10
A
325 328parallel
Strand 11
A
348 350parallel
Strand 12
A
363 365parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 265first strand
Strand 2
A
270 272anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
336 339parallel
Strand 3
A
357 358parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
46 49parallel
Strand 3
B
67 69parallel
Strand 4
B
96 99parallel
Strand 5
B
132 135parallel
Strand 6
B
165 168parallel
Strand 7
B
189 191parallel
Strand 8
B
210 212parallel
Strand 9
B
244 246parallel
Strand 10
B
287 289parallel
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There are 11 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
74 76parallel
Strand 3
B
102 104parallel
Strand 4
B
138 140parallel
Strand 5
B
171 173parallel
Strand 6
B
194 196parallel
Strand 7
B
215 217parallel
Strand 8
B
249 251parallel
Strand 9
B
292 294parallel
Strand 10
B
315 317parallel
Strand 11
B
342 343parallel
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There are 12 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
84 87parallel
Strand 3
B
125 128parallel
Strand 4
B
145 150parallel
Strand 5
B
177 181parallel
Strand 6
B
200 204parallel
Strand 7
B
221 226parallel
Strand 8
B
276 279parallel
Strand 9
B
298 302parallel
Strand 10
B
325 328parallel
Strand 11
B
348 350parallel
Strand 12
B
363 365parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 265first strand
Strand 2
B
270 272anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 312first strand
Strand 2
B
336 339parallel
Strand 3
B
357 358parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
46 49parallel
Strand 3
C
67 69parallel
Strand 4
C
96 99parallel
Strand 5
C
132 135parallel
Strand 6
C
165 168parallel
Strand 7
C
189 191parallel
Strand 8
C
210 212parallel
Strand 9
C
244 246parallel
Strand 10
C
287 289parallel
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There are 11 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
74 76parallel
Strand 3
C
102 104parallel
Strand 4
C
138 140parallel
Strand 5
C
171 173parallel
Strand 6
C
194 196parallel
Strand 7
C
215 217parallel
Strand 8
C
249 251parallel
Strand 9
C
292 294parallel
Strand 10
C
315 317parallel
Strand 11
C
342 343parallel
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There are 12 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
84 87parallel
Strand 3
C
125 128parallel
Strand 4
C
145 150parallel
Strand 5
C
177 181parallel
Strand 6
C
200 204parallel
Strand 7
C
221 226parallel
Strand 8
C
276 279parallel
Strand 9
C
298 302parallel
Strand 10
C
325 328parallel
Strand 11
C
348 350parallel
Strand 12
C
363 365parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 265first strand
Strand 2
C
270 272anti-parallel
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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
309 312first strand
Strand 2
C
336 339parallel
Strand 3
C
357 358parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il