Analysis of interatomic Contacts of Structural Units in PDB entry:
5G5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G5S entry

There is 1 chain in PDB entry 5G5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -1ILE 713
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5G5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 3Right-handed 310
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
38 46Right-handed alpha
Helix 4
4
A
91 93Right-handed 310
Helix 5
5
A
94 109Right-handed alpha
Helix 6
6
A
111 121Right-handed alpha
Helix 7
7
A
164 169Right-handed alpha
Helix 8
8
A
172 178Right-handed alpha
Helix 9
9
A
203 218Right-handed alpha
Helix 10
10
A
222 230Right-handed alpha
Helix 11
11
A
249 251Right-handed 310
Helix 12
12
A
263 270Right-handed alpha
Helix 13
13
A
271 275Right-handed 310
Helix 14
14
A
277 292Right-handed alpha
Helix 15
15
A
326 330Right-handed 310
Helix 16
16
A
331 335Right-handed 310
Helix 17
17
A
365 368Right-handed 310
Helix 18
18
A
369 389Right-handed alpha
Helix 19
19
A
409 419Right-handed alpha
Helix 20
20
A
435 438Right-handed 310
Helix 21
21
A
439 451Right-handed alpha
Helix 22
22
A
461 466Right-handed alpha
Helix 23
23
A
470 484Right-handed alpha
Helix 24
24
A
544 555Right-handed alpha
Helix 25
25
A
574 589Right-handed alpha
Helix 26
26
A
653 665Right-handed alpha
Helix 27
27
A
681 696Right-handed alpha
Helix 28
28
A
701 707Right-handed alpha
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There are 13 sheets in PDB entry 5G5S. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
300 306anti-parallel
Strand 3
A
612 616anti-parallel
Strand 4
A
619 623anti-parallel
Strand 5
A
634 643anti-parallel
Strand 6
A
646 650parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
300 306anti-parallel
Strand 3
A
612 616anti-parallel
Strand 4
A
619 623anti-parallel
Strand 5
A
634 643anti-parallel
Strand 6
A
591 598anti-parallel
Strand 7
A
564 569parallel
Strand 8
A
499 504parallel
Strand 9
A
515 523anti-parallel
Strand 10
A
528 535anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
646 650first strand
Strand 2
A
634 643parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
148 161parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 145first strand
Strand 2
A
148 161anti-parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
183 186anti-parallel
Strand 4
A
253 258anti-parallel
Strand 5
A
148 161anti-parallel
Strand 6
A
132 145anti-parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
183 186anti-parallel
Strand 4
A
253 258anti-parallel
Strand 5
A
148 161anti-parallel
Strand 6
A
12 14parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
23 29anti-parallel
Strand 4
A
82 89anti-parallel
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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
312 315anti-parallel
Strand 3
A
490 491anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
355 363parallel
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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
355 363parallel
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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 460first strand
Strand 2
A
426 432parallel
Strand 3
A
355 363parallel
Strand 4
A
402 405parallel
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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 460first strand
Strand 2
A
426 432parallel
Strand 3
A
355 363parallel
Strand 4
A
395 397parallel
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