Analysis of interatomic Contacts of Structural Units in PDB entry:
5G5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G5T entry

There are 2 chains in PDB entry 5G5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 713
D
 T 1 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5G5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
91 93Right-handed 310
Helix 3
3
A
94 109Right-handed alpha
Helix 4
4
A
111 124Right-handed alpha
Helix 5
5
A
164 169Right-handed alpha
Helix 6
6
A
172 177Right-handed alpha
Helix 7
7
A
178 180Right-handed 310
Helix 8
8
A
203 217Right-handed alpha
Helix 9
9
A
221 229Right-handed alpha
Helix 10
10
A
258 262Right-handed 310
Helix 11
11
A
263 275Right-handed alpha
Helix 12
12
A
277 292Right-handed alpha
Helix 13
13
A
326 330Right-handed 310
Helix 14
14
A
365 367Right-handed 310
Helix 15
15
A
369 389Right-handed alpha
Helix 16
16
A
411 419Right-handed alpha
Helix 17
17
A
442 451Right-handed alpha
Helix 18
18
A
461 466Right-handed alpha
Helix 19
19
A
467 469Right-handed 310
Helix 20
20
A
470 484Right-handed alpha
Helix 21
21
A
544 555Right-handed alpha
Helix 22
22
A
577 589Right-handed alpha
Helix 23
23
A
654 665Right-handed alpha
Helix 24
24
A
681 696Right-handed alpha
Helix 25
25
A
701 707Right-handed alpha
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There are 11 sheets in PDB entry 5G5T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
300 306anti-parallel
Strand 3
A
612 616anti-parallel
Strand 4
A
619 623anti-parallel
Strand 5
A
634 643anti-parallel
Strand 6
A
647 650parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
300 306anti-parallel
Strand 3
A
612 616anti-parallel
Strand 4
A
619 623anti-parallel
Strand 5
A
634 643anti-parallel
Strand 6
A
591 598anti-parallel
Strand 7
A
564 569parallel
Strand 8
A
499 505parallel
Strand 9
A
515 522anti-parallel
Strand 10
A
528 535anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 650first strand
Strand 2
A
634 643parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
149 161anti-parallel
Strand 3
A
132 144anti-parallel
Strand 4
A
127 129anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
23 29anti-parallel
Strand 4
A
80 89anti-parallel
Strand 5
A
68 69anti-parallel
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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
238 241anti-parallel
Strand 3
A
189 200anti-parallel
Strand 4
A
183 186anti-parallel
Strand 5
A
253 255anti-parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
312 315anti-parallel
Strand 3
A
490 491anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
355 363parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
355 363parallel
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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 460first strand
Strand 2
A
426 432parallel
Strand 3
A
355 363parallel
Strand 4
A
402 405parallel
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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 460first strand
Strand 2
A
426 432parallel
Strand 3
A
355 363parallel
Strand 4
A
395 397parallel
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