Analysis of interatomic Contacts of Structural Units in PDB entry:
5G60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5G60 entry

There are 4 chains in PDB entry 5G60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 48	ALA 535
B	LYS 47	ALA 535
C	LYS 47	LYS 537
D	THR 48	GLN 534

There are 89 helices in PDB entry 5G60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	62	65	Right-handed 310
Helix 2	2	A	66	77	Right-handed alpha
Helix 3	3	A	88	99	Right-handed alpha
Helix 4	4	A	112	122	Right-handed alpha
Helix 5	5	A	128	136	Right-handed alpha
Helix 6	6	A	136	146	Right-handed alpha
Helix 7	7	A	146	154	Right-handed alpha
Helix 8	8	A	171	175	Right-handed 310
Helix 9	9	A	187	193	Right-handed alpha
Helix 10	10	A	200	215	Right-handed alpha
Helix 11	11	A	238	246	Right-handed 310
Helix 12	12	A	268	284	Right-handed alpha
Helix 13	13	A	295	305	Right-handed alpha
Helix 14	14	A	315	319	Right-handed 310
Helix 15	15	A	362	374	Right-handed alpha
Helix 16	16	A	375	385	Right-handed alpha
Helix 17	17	A	414	423	Right-handed alpha
Helix 18	18	A	431	434	Right-handed 310
Helix 19	19	A	442	456	Right-handed alpha
Helix 20	20	A	457	460	Right-handed 310
Helix 21	21	A	472	501	Right-handed alpha
Helix 22	22	A	502	517	Right-handed alpha
Helix 23	23	A	518	535	Right-handed alpha
Helix 24	24	B	62	65	Right-handed 310
Helix 25	25	B	66	77	Right-handed alpha
Helix 26	26	B	88	100	Right-handed alpha
Helix 27	27	B	112	122	Right-handed alpha
Helix 28	28	B	128	136	Right-handed alpha
Helix 29	29	B	136	146	Right-handed alpha
Helix 30	30	B	146	154	Right-handed alpha
Helix 31	31	B	171	175	Right-handed 310
Helix 32	32	B	187	193	Right-handed alpha
Helix 33	33	B	200	214	Right-handed alpha
Helix 34	34	B	238	246	Right-handed 310
Helix 35	35	B	268	284	Right-handed alpha
Helix 36	36	B	295	305	Right-handed alpha
Helix 37	37	B	315	319	Right-handed 310
Helix 38	38	B	362	374	Right-handed alpha
Helix 39	39	B	375	385	Right-handed alpha
Helix 40	40	B	414	423	Right-handed alpha
Helix 41	41	B	431	435	Right-handed 310
Helix 42	42	B	442	456	Right-handed alpha
Helix 43	43	B	457	460	Right-handed 310
Helix 44	44	B	472	501	Right-handed alpha
Helix 45	45	B	502	517	Right-handed alpha
Helix 46	46	B	518	535	Right-handed alpha
Helix 47	47	C	62	65	Right-handed 310
Helix 48	48	C	66	77	Right-handed alpha
Helix 49	49	C	88	100	Right-handed alpha
Helix 50	50	C	112	122	Right-handed alpha
Helix 51	51	C	128	136	Right-handed alpha
Helix 52	52	C	136	146	Right-handed alpha
Helix 53	53	C	146	154	Right-handed alpha
Helix 54	54	C	171	175	Right-handed 310
Helix 55	55	C	187	193	Right-handed alpha
Helix 56	56	C	200	214	Right-handed alpha
Helix 57	57	C	238	246	Right-handed 310
Helix 58	58	C	268	284	Right-handed alpha
Helix 59	59	C	295	305	Right-handed alpha
Helix 60	60	C	315	319	Right-handed 310
Helix 61	61	C	362	374	Right-handed alpha
Helix 62	62	C	375	385	Right-handed alpha
Helix 63	63	C	414	423	Right-handed alpha
Helix 64	64	C	431	434	Right-handed 310
Helix 65	65	C	442	456	Right-handed alpha
Helix 66	66	C	457	460	Right-handed 310
Helix 67	67	C	472	501	Right-handed alpha
Helix 68	68	C	502	536	Right-handed alpha
Helix 69	69	D	62	65	Right-handed 310
Helix 70	70	D	66	77	Right-handed alpha
Helix 71	71	D	88	100	Right-handed alpha
Helix 72	72	D	112	122	Right-handed alpha
Helix 73	73	D	128	136	Right-handed alpha
Helix 74	74	D	136	146	Right-handed alpha
Helix 75	75	D	146	153	Right-handed alpha
Helix 76	76	D	171	175	Right-handed 310
Helix 77	77	D	187	193	Right-handed alpha
Helix 78	78	D	200	214	Right-handed alpha
Helix 79	79	D	238	246	Right-handed 310
Helix 80	80	D	268	284	Right-handed alpha
Helix 81	81	D	295	305	Right-handed alpha
Helix 82	82	D	362	374	Right-handed alpha
Helix 83	83	D	375	385	Right-handed alpha
Helix 84	84	D	414	423	Right-handed alpha
Helix 85	85	D	431	434	Right-handed 310
Helix 86	86	D	442	456	Right-handed alpha
Helix 87	87	D	457	460	Right-handed 310
Helix 88	88	D	472	501	Right-handed alpha
Helix 89	89	D	502	534	Right-handed alpha

There are 20 sheets in PDB entry 5G60. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	85	first strand
Strand 2	A	49	54	parallel
Strand 3	A	105	107	parallel
Strand 4	A	354	356	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	165	167	anti-parallel
Strand 3	A	428	430	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	227	first strand
Strand 2	A	308	313	parallel
Strand 3	A	182	186	anti-parallel
Strand 4	A	326	328	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	256	first strand
Strand 2	A	262	264	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	399	first strand
Strand 2	A	404	407	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	85	first strand
Strand 2	B	48	54	parallel
Strand 3	B	105	107	parallel
Strand 4	B	354	356	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	165	167	anti-parallel
Strand 3	B	428	430	parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	227	first strand
Strand 2	B	308	313	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	326	328	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	256	first strand
Strand 2	B	262	264	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	399	first strand
Strand 2	B	404	407	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	85	first strand
Strand 2	C	48	54	parallel
Strand 3	C	105	107	parallel
Strand 4	C	354	356	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	165	167	anti-parallel
Strand 3	C	428	430	parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	228	first strand
Strand 2	C	308	313	parallel
Strand 3	C	182	186	anti-parallel
Strand 4	C	326	328	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	256	first strand
Strand 2	C	262	264	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	399	first strand
Strand 2	C	404	407	anti-parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	85	first strand
Strand 2	D	49	54	parallel
Strand 3	D	105	107	parallel
Strand 4	D	354	356	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	165	167	anti-parallel
Strand 3	D	428	430	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	227	first strand
Strand 2	D	308	313	parallel
Strand 3	D	182	186	anti-parallel
Strand 4	D	326	328	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	256	first strand
Strand 2	D	262	264	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	399	first strand
Strand 2	D	404	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5G60

Analysis of interatomic Contacts of Structural Units in PDB entry:
5G60