Analysis of interatomic Contacts of Structural Units in PDB entry:
5G62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G62 entry

There are 2 chains in PDB entry 5G62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47LYS 537
B
 LYS 47LYS 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 5G62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 65Right-handed 310
Helix 2
2
A
66 77Right-handed alpha
Helix 3
3
A
88 99Right-handed alpha
Helix 4
4
A
112 122Right-handed alpha
Helix 5
5
A
128 136Right-handed alpha
Helix 6
6
A
136 146Right-handed alpha
Helix 7
7
A
147 154Right-handed alpha
Helix 8
8
A
171 175Right-handed 310
Helix 9
9
A
187 194Right-handed alpha
Helix 10
10
A
200 214Right-handed alpha
Helix 11
11
A
238 246Right-handed 310
Helix 12
12
A
268 284Right-handed alpha
Helix 13
13
A
295 305Right-handed alpha
Helix 14
14
A
315 319Right-handed 310
Helix 15
15
A
362 374Right-handed alpha
Helix 16
16
A
375 385Right-handed alpha
Helix 17
17
A
414 423Right-handed alpha
Helix 18
18
A
431 435Right-handed 310
Helix 19
19
A
442 456Right-handed alpha
Helix 20
20
A
457 460Right-handed 310
Helix 21
21
A
472 501Right-handed alpha
Helix 22
22
A
502 517Right-handed alpha
Helix 23
23
A
518 536Right-handed alpha
Helix 24
24
B
62 65Right-handed 310
Helix 25
25
B
66 77Right-handed alpha
Helix 26
26
B
88 99Right-handed alpha
Helix 27
27
B
112 122Right-handed alpha
Helix 28
28
B
128 136Right-handed alpha
Helix 29
29
B
136 146Right-handed alpha
Helix 30
30
B
147 154Right-handed alpha
Helix 31
31
B
171 175Right-handed 310
Helix 32
32
B
187 194Right-handed alpha
Helix 33
33
B
200 214Right-handed alpha
Helix 34
34
B
238 246Right-handed 310
Helix 35
35
B
268 284Right-handed alpha
Helix 36
36
B
295 305Right-handed alpha
Helix 37
37
B
315 319Right-handed 310
Helix 38
38
B
362 374Right-handed alpha
Helix 39
39
B
375 385Right-handed alpha
Helix 40
40
B
414 423Right-handed alpha
Helix 41
41
B
431 435Right-handed 310
Helix 42
42
B
442 456Right-handed alpha
Helix 43
43
B
457 460Right-handed 310
Helix 44
44
B
472 501Right-handed alpha
Helix 45
45
B
502 517Right-handed alpha
Helix 46
46
B
518 536Right-handed alpha
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There are 10 sheets in PDB entry 5G62. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 85first strand
Strand 2
A
48 54parallel
Strand 3
A
105 107parallel
Strand 4
A
354 356anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
165 167anti-parallel
Strand 3
A
428 430parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
308 313parallel
Strand 3
A
182 186anti-parallel
Strand 4
A
326 328anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
262 264anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
404 407anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 85first strand
Strand 2
B
48 54parallel
Strand 3
B
105 107parallel
Strand 4
B
354 356anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 350first strand
Strand 2
B
165 167anti-parallel
Strand 3
B
428 430parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
308 313parallel
Strand 3
B
182 186anti-parallel
Strand 4
B
326 328anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
B
262 264anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 399first strand
Strand 2
B
404 407anti-parallel
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