Analysis of interatomic Contacts of Structural Units in PDB entry:
5G64

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5G64 entry

There are 6 chains in PDB entry 5G64 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 229	SER 542
B	THR 230	VAL 543
H	VAL 2	SER 223
I	GLU 1	PRO 221
L	ILE 2	GLU 217
M	ILE 2	PHE 102

There are 21 helices in PDB entry 5G64. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	276	278	Right-handed 310
Helix 2	2	A	301	305	Right-handed alpha
Helix 3	3	A	344	349	Right-handed alpha
Helix 4	4	A	406	412	Right-handed alpha
Helix 5	5	A	486	488	Right-handed 310
Helix 6	6	A	513	519	Right-handed alpha
Helix 7	7	B	301	305	Right-handed alpha
Helix 8	8	B	344	350	Right-handed alpha
Helix 9	9	B	406	413	Right-handed alpha
Helix 10	10	B	513	519	Right-handed alpha
Helix 11	11	H	87	91	Right-handed 310
Helix 12	12	H	164	166	Right-handed 310
Helix 13	13	H	195	197	Right-handed 310
Helix 14	14	H	209	212	Right-handed 310
Helix 15	15	I	62	65	Right-handed 310
Helix 16	16	I	87	91	Right-handed 310
Helix 17	17	L	83	87	Right-handed 310
Helix 18	18	L	125	131	Right-handed alpha
Helix 19	19	L	187	193	Right-handed alpha
Helix 20	20	M	125	130	Right-handed alpha
Helix 21	21	M	187	192	Right-handed alpha

There are 42 sheets in PDB entry 5G64. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, HA, HB, HC, HD, HE, HF, HG, HH, IA, IB, IC, ID, IE, IF, IG, IH, LA, LB, LC, LD, LE, LF, LG, MA, MB, MC, MD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	287	first strand
Strand 2	A	290	300	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	233	239	anti-parallel
Strand 5	B	234	239	anti-parallel
Strand 6	B	250	256	anti-parallel
Strand 7	B	290	300	anti-parallel
Strand 8	B	280	287	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	264	270	anti-parallel
Strand 3	A	310	316	anti-parallel
Strand 4	A	319	325	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	355	363	anti-parallel
Strand 3	A	397	404	anti-parallel
Strand 4	A	386	391	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	416	420	anti-parallel
Strand 3	A	431	433	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	459	469	anti-parallel
Strand 3	A	503	512	anti-parallel
Strand 4	A	496	497	parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	459	469	anti-parallel
Strand 3	A	503	512	anti-parallel
Strand 4	A	490	492	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	503	512	parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	474	480	anti-parallel
Strand 3	A	522	528	anti-parallel
Strand 4	A	536	541	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	264	270	anti-parallel
Strand 3	B	310	316	anti-parallel
Strand 4	B	319	325	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	355	363	anti-parallel
Strand 3	B	397	404	anti-parallel
Strand 4	B	386	391	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	376	first strand
Strand 2	B	416	421	anti-parallel
Strand 3	B	431	433	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	459	469	anti-parallel
Strand 3	B	503	512	anti-parallel
Strand 4	B	496	497	parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	449	first strand
Strand 2	B	459	469	anti-parallel
Strand 3	B	503	512	anti-parallel
Strand 4	B	491	492	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	497	first strand
Strand 2	B	503	512	parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	474	480	anti-parallel
Strand 3	B	522	528	anti-parallel
Strand 4	B	536	541	anti-parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	anti-parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	107	111	anti-parallel

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There are 6 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	anti-parallel
Strand 3	H	92	100	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	46	53	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	107	111	first strand
Strand 2	H	92	100	anti-parallel

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There are 4 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	parallel

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There are 4 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 2 strands in HG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	178	first strand
Strand 2	H	184	193	parallel

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There are 3 strands in HH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	208	anti-parallel
Strand 3	H	213	219	anti-parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	78	84	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 4 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	115	119	anti-parallel
Strand 3	I	93	101	anti-parallel
Strand 4	I	106	111	anti-parallel

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There are 6 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	115	119	anti-parallel
Strand 3	I	93	101	anti-parallel
Strand 4	I	34	40	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 2 strands in ID sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	106	111	first strand
Strand 2	I	93	101	anti-parallel

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There are 2 strands in IE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	132	first strand
Strand 2	I	145	153	anti-parallel

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There are 5 strands in IF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	171	173	first strand
Strand 2	I	188	191	anti-parallel
Strand 3	I	145	153	anti-parallel
Strand 4	I	184	186	parallel
Strand 5	I	177	178	anti-parallel

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There are 4 strands in IG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	171	173	first strand
Strand 2	I	188	191	anti-parallel
Strand 3	I	145	153	anti-parallel
Strand 4	I	128	132	anti-parallel

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There are 3 strands in IH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	158	162	first strand
Strand 2	I	202	208	anti-parallel
Strand 3	I	213	219	anti-parallel

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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	20	25	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	71	anti-parallel

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There are 5 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	107	111	parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	37	42	anti-parallel
Strand 5	L	48	50	anti-parallel

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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	34	35	anti-parallel

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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	53	first strand
Strand 2	L	57	58	anti-parallel

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There are 4 strands in LE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	122	first strand
Strand 2	L	137	143	anti-parallel
Strand 3	L	177	183	anti-parallel
Strand 4	L	163	167	anti-parallel

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There are 2 strands in LF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	133	134	first strand
Strand 2	L	185	186	anti-parallel

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There are 4 strands in LG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	159	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	209	214	anti-parallel

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There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	74	79	anti-parallel
Strand 4	M	66	71	anti-parallel

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There are 6 strands in MB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	106	110	parallel
Strand 3	M	89	94	anti-parallel
Strand 4	M	37	42	anti-parallel
Strand 5	M	49	53	anti-parallel
Strand 6	M	57	58	anti-parallel

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There are 4 strands in MC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	122	first strand
Strand 2	M	133	143	anti-parallel
Strand 3	M	177	186	anti-parallel
Strand 4	M	163	168	anti-parallel

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There are 4 strands in MD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	157	158	first strand
Strand 2	M	149	154	anti-parallel
Strand 3	M	195	201	anti-parallel
Strand 4	M	209	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5G64

Analysis of interatomic Contacts of Structural Units in PDB entry:
5G64