Analysis of interatomic Contacts of Structural Units in PDB entry:
5G6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5G6V entry

There are 2 chains in PDB entry 5G6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 162ALA 474
B
 MET 162SER 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5G6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
205 218Right-handed alpha
Helix 2
2
A
247 254Right-handed alpha
Helix 3
3
A
259 280Right-handed alpha
Helix 4
4
A
288 290Right-handed 310
Helix 5
5
A
341 358Right-handed alpha
Helix 6
6
A
366 379Right-handed alpha
Helix 7
7
A
388 391Right-handed 310
Helix 8
8
A
392 398Right-handed alpha
Helix 9
9
A
407 412Right-handed alpha
Helix 10
10
A
416 427Right-handed alpha
Helix 11
11
A
430 434Right-handed 310
Helix 12
12
A
436 442Right-handed alpha
Helix 13
13
A
443 450Right-handed 310
Helix 14
14
A
451 456Right-handed 310
Helix 15
15
A
461 466Right-handed 310
Helix 16
16
B
205 218Right-handed alpha
Helix 17
17
B
247 254Right-handed alpha
Helix 18
18
B
259 280Right-handed alpha
Helix 19
19
B
288 290Right-handed 310
Helix 20
20
B
329 334Right-handed alpha
Helix 21
21
B
341 358Right-handed alpha
Helix 22
22
B
366 379Right-handed alpha
Helix 23
23
B
388 391Right-handed 310
Helix 24
24
B
392 399Right-handed alpha
Helix 25
25
B
407 412Right-handed alpha
Helix 26
26
B
416 427Right-handed alpha
Helix 27
27
B
430 434Right-handed 310
Helix 28
28
B
436 442Right-handed alpha
Helix 29
29
B
443 450Right-handed 310
Helix 30
30
B
451 456Right-handed 310
Helix 31
31
B
461 466Right-handed 310
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There are 4 sheets in PDB entry 5G6V. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 231first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
190 197anti-parallel
Strand 4
A
177 184anti-parallel
Strand 5
A
165 173anti-parallel
Strand 6
A
309 310anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
292 294anti-parallel
Strand 3
A
300 302anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 173first strand
Strand 2
B
177 184anti-parallel
Strand 3
B
190 197anti-parallel
Strand 4
B
235 241anti-parallel
Strand 5
B
226 232anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
292 294anti-parallel
Strand 3
B
300 302anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il