Analysis of interatomic Contacts of Structural Units in PDB entry:
5GAO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GAO entry

There are 11 chains in PDB entry 5GAO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
k	ILE 4	LEU 102
l	MET 1	ARG 118
m	ARG 15	PRO 108
n	ASN 4	LYS 85
p	MET 10	SER 92
q	PRO 12	GLU 83
r	VAL 2	ALA 76
E	ALA 5	LYS 560
B	LYS 439	LYS 2163
V	A 73	A 152
A	SER 2147	ASP 2401

There are106 helices in PDB entry 5GAO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	k	12	16	Right-handed 310
Helix 2	AA2	l	3	10	Right-handed alpha
Helix 3	AA3	l	106	114	Right-handed alpha
Helix 4	AA4	m	16	21	Right-handed alpha
Helix 5	AA5	m	23	29	Right-handed alpha
Helix 6	AA6	m	31	40	Right-handed alpha
Helix 7	AA7	n	5	14	Right-handed alpha
Helix 8	AA8	p	12	24	Right-handed alpha
Helix 9	AA9	q	14	22	Right-handed alpha
Helix 10	AB1	r	64	68	Right-handed 310
Helix 11	AB2	E	6	25	Right-handed alpha
Helix 12	AB3	E	41	53	Right-handed alpha
Helix 13	AB4	E	122	126	Right-handed 310
Helix 14	AB5	E	158	164	Right-handed alpha
Helix 15	AB6	E	185	190	Right-handed 310
Helix 16	AB7	E	214	220	Right-handed 310
Helix 17	AB8	E	243	248	Right-handed alpha
Helix 18	AB9	E	273	277	Right-handed 310
Helix 19	AC1	E	311	315	Right-handed alpha
Helix 20	AC2	E	357	362	Right-handed alpha
Helix 21	AC3	E	365	388	Right-handed alpha
Helix 22	AC4	E	396	407	Right-handed alpha
Helix 23	AC5	E	495	500	Right-handed alpha
Helix 24	AC6	E	502	510	Right-handed alpha
Helix 25	AC7	E	541	558	Right-handed alpha
Helix 26	AC8	B	485	490	Right-handed 310
Helix 27	AC9	B	502	513	Right-handed alpha
Helix 28	AD1	B	526	541	Right-handed alpha
Helix 29	AD2	B	563	578	Right-handed alpha
Helix 30	AD3	B	597	602	Right-handed alpha
Helix 31	AD4	B	608	618	Right-handed alpha
Helix 32	AD5	B	621	627	Right-handed alpha
Helix 33	AD6	B	635	641	Right-handed 310
Helix 34	AD7	B	644	657	Right-handed alpha
Helix 35	AD8	B	676	684	Right-handed alpha
Helix 36	AD9	B	695	699	Right-handed 310
Helix 37	AE1	B	714	735	Right-handed alpha
Helix 38	AE2	B	746	765	Right-handed alpha
Helix 39	AE3	B	766	771	Right-handed alpha
Helix 40	AE4	B	776	786	Right-handed alpha
Helix 41	AE5	B	793	800	Right-handed alpha
Helix 42	AE6	B	809	822	Right-handed alpha
Helix 43	AE7	B	832	837	Right-handed alpha
Helix 44	AE8	B	864	873	Right-handed alpha
Helix 45	AE9	B	891	903	Right-handed alpha
Helix 46	AF1	B	911	927	Right-handed alpha
Helix 47	AF2	B	931	941	Right-handed alpha
Helix 48	AF3	B	942	951	Right-handed alpha
Helix 49	AF4	B	952	956	Right-handed 310
Helix 50	AF5	B	959	964	Right-handed alpha
Helix 51	AF6	B	968	984	Right-handed alpha
Helix 52	AF7	B	999	1008	Right-handed alpha
Helix 53	AF8	B	1011	1022	Right-handed alpha
Helix 54	AF9	B	1027	1038	Right-handed alpha
Helix 55	AG1	B	1047	1061	Right-handed alpha
Helix 56	AG2	B	1071	1086	Right-handed alpha
Helix 57	AG3	B	1091	1120	Right-handed alpha
Helix 58	AG4	B	1121	1138	Right-handed alpha
Helix 59	AG5	B	1144	1149	Right-handed 310
Helix 60	AG6	B	1153	1163	Right-handed alpha
Helix 61	AG7	B	1166	1173	Right-handed alpha
Helix 62	AG8	B	1175	1182	Right-handed alpha
Helix 63	AG9	B	1188	1195	Right-handed alpha
Helix 64	AH1	B	1277	1283	Right-handed alpha
Helix 65	AH2	B	1338	1343	Right-handed 310
Helix 66	AH3	B	1349	1360	Right-handed alpha
Helix 67	AH4	B	1375	1390	Right-handed alpha
Helix 68	AH5	B	1401	1421	Right-handed alpha
Helix 69	AH6	B	1431	1442	Right-handed alpha
Helix 70	AH7	B	1448	1457	Right-handed alpha
Helix 71	AH8	B	1462	1467	Right-handed alpha
Helix 72	AH9	B	1483	1500	Right-handed alpha
Helix 73	AI1	B	1518	1525	Right-handed alpha
Helix 74	AI2	B	1528	1532	Right-handed 310
Helix 75	AI3	B	1536	1540	Right-handed 310
Helix 76	AI4	B	1560	1577	Right-handed alpha
Helix 77	AI5	B	1587	1605	Right-handed alpha
Helix 78	AI6	B	1613	1621	Right-handed alpha
Helix 79	AI7	B	1626	1634	Right-handed alpha
Helix 80	AI8	B	1645	1658	Right-handed alpha
Helix 81	AI9	B	1669	1673	Right-handed 310
Helix 82	AJ1	B	1699	1709	Right-handed alpha
Helix 83	AJ2	B	1726	1736	Right-handed alpha
Helix 84	AJ3	B	1745	1760	Right-handed alpha
Helix 85	AJ4	B	1767	1775	Right-handed alpha
Helix 86	AJ5	B	1776	1783	Right-handed alpha
Helix 87	AJ6	B	1797	1815	Right-handed alpha
Helix 88	AJ7	B	1847	1857	Right-handed alpha
Helix 89	AJ8	B	1859	1870	Right-handed alpha
Helix 90	AJ9	B	1875	1885	Right-handed alpha
Helix 91	AK1	B	1886	1891	Right-handed 310
Helix 92	AK2	B	1897	1907	Right-handed alpha
Helix 93	AK3	B	1921	1935	Right-handed alpha
Helix 94	AK4	B	1940	1969	Right-handed alpha
Helix 95	AK5	B	1972	1986	Right-handed alpha
Helix 96	AK6	B	2001	2010	Right-handed alpha
Helix 97	AK7	B	2016	2022	Right-handed alpha
Helix 98	AK8	B	2023	2031	Right-handed alpha
Helix 99	AK9	B	2034	2048	Right-handed alpha
Helix 100	AL1	A	2148	2160	Right-handed alpha
Helix 101	AL2	A	2161	2167	Right-handed 310
Helix 102	AL3	A	2187	2197	Right-handed alpha
Helix 103	AL4	A	2270	2281	Right-handed alpha
Helix 104	AL5	A	2308	2319	Right-handed alpha
Helix 105	AL6	A	2322	2330	Right-handed alpha
Helix 106	AL7	A	2388	2397	Right-handed alpha

There are 28 sheets in PDB entry 5GAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	44	45	first strand
Strand 2	k	30	36	anti-parallel
Strand 3	k	19	24	anti-parallel
Strand 4	k	92	97	anti-parallel
Strand 5	l	85	87	anti-parallel
Strand 6	l	39	40	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	84	87	first strand
Strand 2	n	69	74	anti-parallel
Strand 3	n	18	23	anti-parallel
Strand 4	n	28	32	anti-parallel
Strand 5	n	48	50	anti-parallel
Strand 6	n	57	58	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	14	16	first strand
Strand 2	l	26	28	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	18	19	first strand
Strand 2	l	92	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	43	47	first strand
Strand 2	m	53	60	anti-parallel
Strand 3	m	68	77	anti-parallel
Strand 4	m	86	91	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	103	105	first strand
Strand 2	q	63	73	anti-parallel
Strand 3	q	51	60	anti-parallel
Strand 4	q	37	42	anti-parallel
Strand 5	q	26	31	anti-parallel
Strand 6	q	78	82	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	42	45	first strand
Strand 2	n	61	64	anti-parallel
Strand 3	r	70	73	anti-parallel
Strand 4	r	14	18	anti-parallel
Strand 5	r	26	31	anti-parallel
Strand 6	r	39	40	anti-parallel
Strand 7	r	61	62	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	37	43	first strand
Strand 2	p	52	61	anti-parallel
Strand 3	p	80	82	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	44	45	first strand
Strand 2	r	55	56	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	464	first strand
Strand 2	B	706	707	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	587	first strand
Strand 2	B	604	607	parallel
Strand 3	B	556	560	parallel
Strand 4	B	628	633	parallel
Strand 5	B	666	671	parallel
Strand 6	B	517	520	parallel
Strand 7	B	691	693	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	704	first strand
Strand 2	B	884	886	parallel
Strand 3	B	844	847	parallel
Strand 4	B	740	743	parallel
Strand 5	B	827	830	parallel
Strand 6	B	803	804	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	853	854	first strand
Strand 2	B	859	860	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	987	988	first strand
Strand 2	B	997	998	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1205	1209	first strand
Strand 2	B	1216	1222	anti-parallel
Strand 3	B	1268	1274	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1251	1259	first strand
Strand 2	B	1237	1244	anti-parallel
Strand 3	B	1287	1292	anti-parallel
Strand 4	B	1302	1307	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1366	1369	first strand
Strand 2	B	1507	1511	parallel
Strand 3	B	1470	1473	parallel
Strand 4	B	1395	1398	parallel
Strand 5	B	1444	1446	parallel
Strand 6	B	1425	1427	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1544	1551	first strand
Strand 2	B	1718	1725	parallel
Strand 3	B	1679	1683	parallel
Strand 4	B	1581	1585	parallel
Strand 5	B	1664	1667	parallel
Strand 6	B	1638	1640	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1688	1689	first strand
Strand 2	B	1694	1695	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1820	1823	first strand
Strand 2	B	1843	1846	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2052	2057	first strand
Strand 2	B	2071	2076	anti-parallel
Strand 3	B	2123	2127	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2068	2069	first strand
Strand 2	B	2130	2131	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2085	2086	first strand
Strand 2	B	2095	2096	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2110	2117	first strand
Strand 2	B	2099	2105	anti-parallel
Strand 3	B	2136	2146	anti-parallel
Strand 4	B	2156	2162	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2168	2169	first strand
Strand 2	A	2299	2305	parallel
Strand 3	A	2290	2296	anti-parallel
Strand 4	A	2260	2262	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2254	2258	first strand
Strand 2	A	2206	2210	anti-parallel
Strand 3	A	2219	2225	anti-parallel
Strand 4	A	2182	2186	parallel
Strand 5	A	2338	2342	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2254	2258	first strand
Strand 2	A	2206	2210	anti-parallel
Strand 3	A	2219	2225	anti-parallel
Strand 4	A	2348	2352	parallel
Strand 5	A	2374	2376	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2229	2232	first strand
Strand 2	A	2235	2238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GAO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GAO