Analysis of interatomic Contacts of Structural Units in PDB entry:
5GAQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GAQ entry

There are 9 chains in PDB entry 5GAQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 10	GLY 297
B	GLU 10	GLY 297
C	GLU 10	GLY 297
D	GLU 10	GLY 297
E	GLU 10	GLY 297
F	GLU 10	GLY 297
G	GLU 10	GLY 297
H	GLU 10	GLY 297
I	GLU 10	GLY 297

There are 9 helices in PDB entry 5GAQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	240	243	Right-handed 310
Helix 2	AA2	B	240	243	Right-handed 310
Helix 3	AA3	C	240	243	Right-handed 310
Helix 4	AA4	D	240	243	Right-handed 310
Helix 5	AA5	E	240	243	Right-handed 310
Helix 6	AA6	F	240	243	Right-handed 310
Helix 7	AA7	G	240	243	Right-handed 310
Helix 8	AA8	H	240	243	Right-handed 310
Helix 9	AA9	I	240	243	Right-handed 310

There are 63 sheets in PDB entry 5GAQ. Click on sheet of interest to get list of strands forming it: A, B, D, E, F, G, H, I, J, L, M, N, O, P, Q, R, T, U, V, W, X, Y, Z, AB, AC, AD, AE, AF, AG, AH, AJ, AK, AL, AM, AN, AO, AP, AR, AS, AT, AU, AV, AW, AX, AZ, BA, BB, BC, BD, BE, BF, BH, BI, BJ, BK, BL, BM, BN, BP, BQ, BR, BS, BT,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	156	first strand
Strand 2	A	11	28	anti-parallel
Strand 3	A	111	122	anti-parallel
Strand 4	A	128	138	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	66	first strand
Strand 2	A	74	107	first strand

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	291	295	anti-parallel
Strand 3	A	257	259	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	184	first strand
Strand 2	A	187	193	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	204	first strand
Strand 2	A	209	213	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	226	first strand
Strand 2	A	232	235	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	281	285	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	156	first strand
Strand 2	B	11	28	anti-parallel
Strand 3	B	111	122	anti-parallel
Strand 4	B	128	138	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	66	first strand
Strand 2	B	74	107	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	172	first strand
Strand 2	B	291	295	anti-parallel
Strand 3	B	257	259	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	184	first strand
Strand 2	B	187	193	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	204	first strand
Strand 2	B	209	213	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	226	first strand
Strand 2	B	232	235	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	273	first strand
Strand 2	B	281	285	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	156	first strand
Strand 2	C	11	28	anti-parallel
Strand 3	C	111	122	anti-parallel
Strand 4	C	128	138	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	66	first strand
Strand 2	C	74	107	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	172	first strand
Strand 2	C	291	295	anti-parallel
Strand 3	C	257	259	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	184	first strand
Strand 2	C	187	193	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	204	first strand
Strand 2	C	209	213	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	226	first strand
Strand 2	C	232	235	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	281	285	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	156	first strand
Strand 2	D	11	28	anti-parallel
Strand 3	D	111	122	anti-parallel
Strand 4	D	128	138	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	66	first strand
Strand 2	D	74	107	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	172	first strand
Strand 2	D	291	295	anti-parallel
Strand 3	D	257	259	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	184	first strand
Strand 2	D	187	193	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	200	204	first strand
Strand 2	D	209	213	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	226	first strand
Strand 2	D	232	235	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	273	first strand
Strand 2	D	281	285	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	148	156	first strand
Strand 2	E	11	28	anti-parallel
Strand 3	E	111	122	anti-parallel
Strand 4	E	128	138	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	66	first strand
Strand 2	E	74	107	anti-parallel

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There are 3 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	172	first strand
Strand 2	E	291	295	anti-parallel
Strand 3	E	257	259	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	184	first strand
Strand 2	E	187	193	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	204	first strand
Strand 2	E	209	213	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	226	first strand
Strand 2	E	232	235	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	273	first strand
Strand 2	E	281	285	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	156	first strand
Strand 2	F	11	28	anti-parallel
Strand 3	F	111	122	anti-parallel
Strand 4	F	128	138	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	66	first strand
Strand 2	F	74	107	anti-parallel

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There are 3 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	172	first strand
Strand 2	F	291	295	anti-parallel
Strand 3	F	257	259	anti-parallel

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There are 2 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	184	first strand
Strand 2	F	187	193	anti-parallel

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There are 2 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	200	204	first strand
Strand 2	F	209	213	anti-parallel

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There are 2 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	226	first strand
Strand 2	F	232	235	anti-parallel

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There are 2 strands in AV sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	273	first strand
Strand 2	F	281	285	anti-parallel

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There are 4 strands in AW sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	156	first strand
Strand 2	G	11	28	anti-parallel
Strand 3	G	111	122	anti-parallel
Strand 4	G	128	138	anti-parallel

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There are 2 strands in AX sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	66	first strand
Strand 2	G	74	107	anti-parallel

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There are 3 strands in AZ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	172	first strand
Strand 2	G	291	295	anti-parallel
Strand 3	G	257	259	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	184	first strand
Strand 2	G	187	193	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	204	first strand
Strand 2	G	209	213	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	223	226	first strand
Strand 2	G	232	235	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	273	first strand
Strand 2	G	281	285	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	148	156	first strand
Strand 2	H	11	28	anti-parallel
Strand 3	H	111	122	anti-parallel
Strand 4	H	128	138	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	66	first strand
Strand 2	H	74	107	anti-parallel

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There are 3 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	172	first strand
Strand 2	H	291	295	anti-parallel
Strand 3	H	257	259	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	184	first strand
Strand 2	H	187	193	anti-parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	200	204	first strand
Strand 2	H	209	213	anti-parallel

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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	223	226	first strand
Strand 2	H	232	235	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	269	273	first strand
Strand 2	H	281	285	anti-parallel

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There are 4 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	148	156	first strand
Strand 2	I	11	28	anti-parallel
Strand 3	I	111	122	anti-parallel
Strand 4	I	128	138	anti-parallel

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There are 2 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	66	first strand
Strand 2	I	74	107	anti-parallel

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There are 3 strands in BP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	168	172	first strand
Strand 2	I	291	295	anti-parallel
Strand 3	I	257	259	anti-parallel

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There are 2 strands in BQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	178	184	first strand
Strand 2	I	187	193	anti-parallel

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There are 2 strands in BR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	200	204	first strand
Strand 2	I	209	213	anti-parallel

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There are 2 strands in BS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	223	226	first strand
Strand 2	I	232	235	anti-parallel

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There are 2 strands in BT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	269	273	first strand
Strand 2	I	281	285	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GAQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GAQ