Analysis of interatomic Contacts of Structural Units in PDB entry:
5GG4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GG4 entry

There are 8 chains in PDB entry 5GG4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 562	LEU 881
B	HIS 562	ILE 885
C	HIS 562	VAL 796
D	HIS 562	ASP 795
E	GLY 621	LEU 631
F	GLY 621	LYS 629
G	GLY 621	HIS 630
H	ARG 620	LEU 631

There are 39 helices in PDB entry 5GG4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	573	575	Right-handed 310
Helix 2	AA2	A	601	614	Right-handed alpha
Helix 3	AA3	A	616	620	Right-handed 310
Helix 4	AA4	A	647	652	Right-handed alpha
Helix 5	AA5	A	712	715	Right-handed 310
Helix 6	AA6	A	716	725	Right-handed alpha
Helix 7	AA7	A	752	757	Right-handed alpha
Helix 8	AA8	A	772	778	Right-handed 310
Helix 9	AA9	A	782	792	Right-handed alpha
Helix 10	AB1	A	818	831	Right-handed alpha
Helix 11	AB2	A	833	837	Right-handed 310
Helix 12	AB3	A	860	866	Right-handed alpha
Helix 13	AB4	B	573	576	Right-handed 310
Helix 14	AB5	B	601	613	Right-handed alpha
Helix 15	AB6	B	616	618	Right-handed 310
Helix 16	AB7	B	647	652	Right-handed alpha
Helix 17	AB8	B	712	715	Right-handed 310
Helix 18	AB9	B	716	724	Right-handed alpha
Helix 19	AC1	B	752	757	Right-handed alpha
Helix 20	AC2	B	772	777	Right-handed 310
Helix 21	AC3	B	782	792	Right-handed alpha
Helix 22	AC4	B	818	831	Right-handed alpha
Helix 23	AC5	B	860	865	Right-handed alpha
Helix 24	AC6	C	573	576	Right-handed 310
Helix 25	AC7	C	601	613	Right-handed alpha
Helix 26	AC8	C	647	652	Right-handed alpha
Helix 27	AC9	C	713	715	Right-handed 310
Helix 28	AD1	C	716	725	Right-handed alpha
Helix 29	AD2	C	752	757	Right-handed alpha
Helix 30	AD3	C	772	777	Right-handed 310
Helix 31	AD4	C	782	792	Right-handed alpha
Helix 32	AD5	D	573	576	Right-handed 310
Helix 33	AD6	D	601	614	Right-handed alpha
Helix 34	AD7	D	647	652	Right-handed alpha
Helix 35	AD8	D	712	715	Right-handed 310
Helix 36	AD9	D	716	724	Right-handed alpha
Helix 37	AE1	D	752	757	Right-handed alpha
Helix 38	AE2	D	772	778	Right-handed 310
Helix 39	AE3	D	782	790	Right-handed alpha

There are 10 sheets in PDB entry 5GG4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	592	597	first strand
Strand 2	A	564	571	anti-parallel
Strand 3	A	658	663	parallel
Strand 4	A	621	627	anti-parallel
Strand 5	A	633	635	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	708	first strand
Strand 2	A	684	693	anti-parallel
Strand 3	A	764	770	parallel
Strand 4	A	732	739	anti-parallel
Strand 5	A	742	745	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	814	first strand
Strand 2	A	793	800	anti-parallel
Strand 3	A	875	879	parallel
Strand 4	A	838	839	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	597	first strand
Strand 2	B	564	571	anti-parallel
Strand 3	B	658	664	parallel
Strand 4	B	620	627	anti-parallel
Strand 5	B	633	635	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	708	first strand
Strand 2	B	684	693	anti-parallel
Strand 3	B	765	770	parallel
Strand 4	B	732	739	anti-parallel
Strand 5	B	742	745	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	810	814	first strand
Strand 2	B	793	800	anti-parallel
Strand 3	B	874	878	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	592	597	first strand
Strand 2	C	564	571	anti-parallel
Strand 3	C	658	664	parallel
Strand 4	C	620	628	anti-parallel
Strand 5	C	632	635	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	708	first strand
Strand 2	C	684	693	anti-parallel
Strand 3	C	764	770	parallel
Strand 4	C	732	739	anti-parallel
Strand 5	C	742	745	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	592	597	first strand
Strand 2	D	564	571	anti-parallel
Strand 3	D	658	664	parallel
Strand 4	D	620	628	anti-parallel
Strand 5	D	632	635	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	698	708	first strand
Strand 2	D	684	693	anti-parallel
Strand 3	D	765	770	parallel
Strand 4	D	732	739	anti-parallel
Strand 5	D	742	745	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GG4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GG4