Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GGA entry

There is 1 chain in PDB entry 5GGA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 21LYS 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5GGA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 87Right-handed alpha
Helix 2
AA2
A
136 143Right-handed alpha
Helix 3
AA3
A
145 158Right-handed alpha
Helix 4
AA4
A
189 205Right-handed alpha
Helix 5
AA5
A
216 231Right-handed alpha
Helix 6
AA6
A
238 240Right-handed 310
Helix 7
AA7
A
241 248Right-handed alpha
Helix 8
AA8
A
248 262Right-handed alpha
Helix 9
AA9
A
274 286Right-handed alpha
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There are 3 sheets in PDB entry 5GGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
23 33anti-parallel
Strand 4
A
106 120parallel
Strand 5
A
88 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
23 33anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
130 135anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
210 214parallel
Strand 3
A
266 270parallel
Strand 4
A
163 169parallel
Strand 5
A
300 306anti-parallel
Strand 6
A
309 316anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il