Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GGF entry

There are 3 chains in PDB entry 5GGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 97	PRO 646
B	ARG 97	PRO 647
C	ARG 97	PRO 291

There are 55 helices in PDB entry 5GGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	155	166	Right-handed alpha
Helix 2	AA2	A	186	196	Right-handed alpha
Helix 3	AA3	A	248	253	Right-handed alpha
Helix 4	AA4	A	260	270	Right-handed alpha
Helix 5	AA5	A	275	280	Right-handed 310
Helix 6	AA6	A	311	324	Right-handed alpha
Helix 7	AA7	A	329	331	Right-handed 310
Helix 8	AA8	A	341	351	Right-handed alpha
Helix 9	AA9	A	363	383	Right-handed alpha
Helix 10	AB1	A	401	416	Right-handed alpha
Helix 11	AB2	A	455	461	Right-handed alpha
Helix 12	AB3	A	462	466	Right-handed 310
Helix 13	AB4	A	474	481	Right-handed alpha
Helix 14	AB5	A	481	486	Right-handed alpha
Helix 15	AB6	A	532	536	Right-handed 310
Helix 16	AB7	A	537	552	Right-handed alpha
Helix 17	AB8	A	563	567	Right-handed 310
Helix 18	AB9	A	587	597	Right-handed alpha
Helix 19	AC1	A	629	635	Right-handed 310
Helix 20	AC2	B	155	165	Right-handed alpha
Helix 21	AC3	B	186	196	Right-handed alpha
Helix 22	AC4	B	259	270	Right-handed alpha
Helix 23	AC5	B	275	280	Right-handed 310
Helix 24	AC6	B	311	324	Right-handed alpha
Helix 25	AC7	B	329	331	Right-handed 310
Helix 26	AC8	B	341	351	Right-handed alpha
Helix 27	AC9	B	363	383	Right-handed alpha
Helix 28	AD1	B	401	416	Right-handed alpha
Helix 29	AD2	B	455	461	Right-handed alpha
Helix 30	AD3	B	462	466	Right-handed 310
Helix 31	AD4	B	474	481	Right-handed alpha
Helix 32	AD5	B	481	486	Right-handed alpha
Helix 33	AD6	B	533	536	Right-handed 310
Helix 34	AD7	B	537	552	Right-handed alpha
Helix 35	AD8	B	587	597	Right-handed alpha
Helix 36	AD9	B	629	635	Right-handed 310
Helix 37	AE1	C	155	166	Right-handed alpha
Helix 38	AE2	C	186	196	Right-handed alpha
Helix 39	AE3	C	248	253	Right-handed alpha
Helix 40	AE4	C	260	270	Right-handed alpha
Helix 41	AE5	C	275	280	Right-handed 310
Helix 42	AE6	C	311	324	Right-handed alpha
Helix 43	AE7	C	329	331	Right-handed 310
Helix 44	AE8	C	341	351	Right-handed alpha
Helix 45	AE9	C	363	383	Right-handed alpha
Helix 46	AF1	C	401	416	Right-handed alpha
Helix 47	AF2	C	455	461	Right-handed alpha
Helix 48	AF3	C	462	466	Right-handed 310
Helix 49	AF4	C	474	480	Right-handed alpha
Helix 50	AF5	C	481	486	Right-handed alpha
Helix 51	AF6	C	532	536	Right-handed 310
Helix 52	AF7	C	537	552	Right-handed alpha
Helix 53	AF8	C	563	567	Right-handed 310
Helix 54	AF9	C	587	597	Right-handed alpha
Helix 55	AG1	C	631	635	Right-handed 310

There are 15 sheets in PDB entry 5GGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	122	first strand
Strand 2	A	110	114	anti-parallel
Strand 3	A	98	105	anti-parallel
Strand 4	A	238	245	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	149	first strand
Strand 2	A	130	136	anti-parallel
Strand 3	A	172	178	anti-parallel
Strand 4	A	209	215	anti-parallel
Strand 5	A	220	226	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	333	338	parallel
Strand 3	A	304	308	parallel
Strand 4	A	388	393	parallel
Strand 5	A	451	454	anti-parallel
Strand 6	A	419	423	anti-parallel
Strand 7	A	489	493	parallel
Strand 8	A	440	443	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	398	first strand
Strand 2	A	498	500	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	574	581	parallel
Strand 3	A	619	627	parallel
Strand 4	A	611	616	anti-parallel
Strand 5	A	607	608	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	122	first strand
Strand 2	B	110	114	anti-parallel
Strand 3	B	98	105	anti-parallel
Strand 4	B	238	245	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	149	first strand
Strand 2	B	130	136	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	209	215	anti-parallel
Strand 5	B	220	226	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	333	337	parallel
Strand 3	B	304	308	parallel
Strand 4	B	388	393	parallel
Strand 5	B	451	454	anti-parallel
Strand 6	B	419	423	anti-parallel
Strand 7	B	489	493	parallel
Strand 8	B	440	443	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	398	first strand
Strand 2	B	498	500	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	575	581	first strand
Strand 2	B	621	627	parallel
Strand 3	B	611	614	anti-parallel
Strand 4	B	607	608	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	122	first strand
Strand 2	C	110	114	anti-parallel
Strand 3	C	98	105	anti-parallel
Strand 4	C	238	245	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	149	first strand
Strand 2	C	130	136	anti-parallel
Strand 3	C	172	178	anti-parallel
Strand 4	C	209	215	anti-parallel
Strand 5	C	220	226	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	333	337	parallel
Strand 3	C	304	308	parallel
Strand 4	C	388	393	parallel
Strand 5	C	451	454	anti-parallel
Strand 6	C	419	423	anti-parallel
Strand 7	C	489	493	parallel
Strand 8	C	440	443	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	398	first strand
Strand 2	C	498	500	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	553	554	first strand
Strand 2	C	574	581	parallel
Strand 3	C	619	627	parallel
Strand 4	C	611	616	anti-parallel
Strand 5	C	607	608	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGF