Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GGG entry

There is 1 chain in PDB entry 5GGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 97PRO 647
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5GGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 167Right-handed alpha
Helix 2
AA2
A
185 196Right-handed alpha
Helix 3
AA3
A
259 270Right-handed alpha
Helix 4
AA4
A
275 280Right-handed 310
Helix 5
AA5
A
311 324Right-handed alpha
Helix 6
AA6
A
329 331Right-handed 310
Helix 7
AA7
A
341 351Right-handed alpha
Helix 8
AA8
A
363 383Right-handed alpha
Helix 9
AA9
A
401 410Right-handed alpha
Helix 10
AB1
A
410 416Right-handed alpha
Helix 11
AB2
A
455 461Right-handed alpha
Helix 12
AB3
A
462 466Right-handed 310
Helix 13
AB4
A
474 480Right-handed alpha
Helix 14
AB5
A
481 486Right-handed alpha
Helix 15
AB6
A
532 536Right-handed 310
Helix 16
AB7
A
537 552Right-handed alpha
Helix 17
AB8
A
563 567Right-handed 310
Helix 18
AB9
A
587 597Right-handed alpha
Helix 19
AC1
A
631 635Right-handed 310
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There are 5 sheets in PDB entry 5GGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
110 114anti-parallel
Strand 3
A
98 105anti-parallel
Strand 4
A
238 245anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 149first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
220 226anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
333 338parallel
Strand 3
A
304 308parallel
Strand 4
A
388 393parallel
Strand 5
A
451 454anti-parallel
Strand 6
A
419 423anti-parallel
Strand 7
A
489 493parallel
Strand 8
A
440 443anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
498 500anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 554first strand
Strand 2
A
574 581parallel
Strand 3
A
619 627parallel
Strand 4
A
611 616anti-parallel
Strand 5
A
607 608anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il