Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GGI entry

There are 4 chains in PDB entry 5GGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 254PRO 647
B
 ARG 97PRO 647
F
 ALA 1PRO 9
G
 ALA 1PRO 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5GGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
259 270Right-handed alpha
Helix 2
AA2
A
275 279Right-handed 310
Helix 3
AA3
A
311 323Right-handed alpha
Helix 4
AA4
A
329 331Right-handed 310
Helix 5
AA5
A
341 352Right-handed alpha
Helix 6
AA6
A
363 383Right-handed alpha
Helix 7
AA7
A
401 416Right-handed alpha
Helix 8
AA8
A
455 461Right-handed alpha
Helix 9
AA9
A
462 466Right-handed 310
Helix 10
AB1
A
474 480Right-handed alpha
Helix 11
AB2
A
481 486Right-handed alpha
Helix 12
AB3
A
509 517Right-handed alpha
Helix 13
AB4
A
532 536Right-handed 310
Helix 14
AB5
A
537 552Right-handed alpha
Helix 15
AB6
A
563 567Right-handed 310
Helix 16
AB7
A
587 598Right-handed alpha
Helix 17
AB8
A
629 635Right-handed 310
Helix 18
AB9
B
155 166Right-handed alpha
Helix 19
AC1
B
186 196Right-handed alpha
Helix 20
AC2
B
200 204Right-handed 310
Helix 21
AC3
B
259 270Right-handed alpha
Helix 22
AC4
B
275 279Right-handed 310
Helix 23
AC5
B
311 323Right-handed alpha
Helix 24
AC6
B
329 331Right-handed 310
Helix 25
AC7
B
341 351Right-handed alpha
Helix 26
AC8
B
364 383Right-handed alpha
Helix 27
AC9
B
401 416Right-handed alpha
Helix 28
AD1
B
455 461Right-handed alpha
Helix 29
AD2
B
462 466Right-handed 310
Helix 30
AD3
B
474 480Right-handed alpha
Helix 31
AD4
B
481 486Right-handed alpha
Helix 32
AD5
B
509 517Right-handed alpha
Helix 33
AD6
B
532 536Right-handed 310
Helix 34
AD7
B
537 552Right-handed alpha
Helix 35
AD8
B
563 567Right-handed 310
Helix 36
AD9
B
587 597Right-handed alpha
Helix 37
AE1
B
629 635Right-handed 310
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There are 8 sheets in PDB entry 5GGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
333 337parallel
Strand 3
A
304 308parallel
Strand 4
A
388 393parallel
Strand 5
A
451 454anti-parallel
Strand 6
A
419 423anti-parallel
Strand 7
A
489 493parallel
Strand 8
A
440 443anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
498 500anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 554first strand
Strand 2
A
574 581parallel
Strand 3
A
619 627parallel
Strand 4
A
611 616anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 122first strand
Strand 2
B
110 114anti-parallel
Strand 3
B
98 105anti-parallel
Strand 4
B
238 245anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 149first strand
Strand 2
B
130 136anti-parallel
Strand 3
B
172 178anti-parallel
Strand 4
B
209 215anti-parallel
Strand 5
B
220 226anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
333 338parallel
Strand 3
B
304 308parallel
Strand 4
B
388 393parallel
Strand 5
B
451 454anti-parallel
Strand 6
B
419 423anti-parallel
Strand 7
B
489 493parallel
Strand 8
B
440 443anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 398first strand
Strand 2
B
498 500anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
553 554first strand
Strand 2
B
574 581parallel
Strand 3
B
619 627parallel
Strand 4
B
611 616anti-parallel
Strand 5
B
607 608anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il