Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GGW entry

There are 2 chains in PDB entry 5GGW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLN 358
B
 HIS -1GLN 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5GGW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 21Right-handed alpha
Helix 2
AA2
A
62 77Right-handed alpha
Helix 3
AA3
A
85 89Right-handed 310
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
124 134Right-handed alpha
Helix 7
AA7
A
148 160Right-handed alpha
Helix 8
AA8
A
161 164Right-handed 310
Helix 9
AA9
A
166 175Right-handed alpha
Helix 10
AB1
A
189 196Right-handed 310
Helix 11
AB2
A
213 218Right-handed alpha
Helix 12
AB3
A
223 236Right-handed alpha
Helix 13
AB4
A
237 240Right-handed 310
Helix 14
AB5
A
242 253Right-handed alpha
Helix 15
AB6
A
276 285Right-handed alpha
Helix 16
AB7
A
285 290Right-handed alpha
Helix 17
AB8
A
327 330Right-handed 310
Helix 18
AB9
A
342 358Right-handed alpha
Helix 19
AC1
B
2 21Right-handed alpha
Helix 20
AC2
B
62 77Right-handed alpha
Helix 21
AC3
B
85 90Right-handed 310
Helix 22
AC4
B
102 108Right-handed alpha
Helix 23
AC5
B
124 134Right-handed alpha
Helix 24
AC6
B
148 160Right-handed alpha
Helix 25
AC7
B
161 164Right-handed 310
Helix 26
AC8
B
166 175Right-handed alpha
Helix 27
AC9
B
189 196Right-handed 310
Helix 28
AD1
B
213 218Right-handed alpha
Helix 29
AD2
B
223 236Right-handed alpha
Helix 30
AD3
B
237 240Right-handed 310
Helix 31
AD4
B
242 253Right-handed alpha
Helix 32
AD5
B
276 284Right-handed alpha
Helix 33
AD6
B
285 290Right-handed alpha
Helix 34
AD7
B
327 330Right-handed 310
Helix 35
AD8
B
342 358Right-handed alpha
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There are 8 sheets in PDB entry 5GGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
34 44anti-parallel
Strand 3
A
24 31anti-parallel
Strand 4
A
331 337anti-parallel
Strand 5
A
320 326anti-parallel
Strand 6
A
308 315anti-parallel
Strand 7
A
269 272anti-parallel
Strand 8
A
262 264anti-parallel
Strand 9
A
255 259anti-parallel
Strand 10
A
296 302anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
221 222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
293 294anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
204 206anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
34 44anti-parallel
Strand 3
B
24 31anti-parallel
Strand 4
B
331 337anti-parallel
Strand 5
B
320 326anti-parallel
Strand 6
B
308 315anti-parallel
Strand 7
B
269 272anti-parallel
Strand 8
B
262 264anti-parallel
Strand 9
B
255 259anti-parallel
Strand 10
B
296 302anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
221 222anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
293 294anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
204 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il