Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GGX entry

There are 4 chains in PDB entry 5GGX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 53PRO 317
B
 SER 52PRO 317
C
 SER 52PRO 317
D
 GLY 51PRO 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5GGX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 70Right-handed alpha
Helix 2
AA2
A
79 87Right-handed alpha
Helix 3
AA3
A
106 113Right-handed alpha
Helix 4
AA4
A
121 126Right-handed 310
Helix 5
AA5
A
127 132Right-handed alpha
Helix 6
AA6
A
149 164Right-handed alpha
Helix 7
AA7
A
166 190Right-handed alpha
Helix 8
AA8
A
217 226Right-handed alpha
Helix 9
AA9
A
237 239Right-handed 310
Helix 10
AB1
A
247 251Right-handed 310
Helix 11
AB2
A
265 271Right-handed alpha
Helix 12
AB3
A
278 283Right-handed alpha
Helix 13
AB4
A
298 314Right-handed alpha
Helix 14
AB5
B
60 70Right-handed alpha
Helix 15
AB6
B
79 87Right-handed alpha
Helix 16
AB7
B
106 113Right-handed alpha
Helix 17
AB8
B
121 126Right-handed 310
Helix 18
AB9
B
127 133Right-handed alpha
Helix 19
AC1
B
149 165Right-handed alpha
Helix 20
AC2
B
166 190Right-handed alpha
Helix 21
AC3
B
217 226Right-handed alpha
Helix 22
AC4
B
237 239Right-handed 310
Helix 23
AC5
B
247 251Right-handed 310
Helix 24
AC6
B
265 271Right-handed alpha
Helix 25
AC7
B
272 277Right-handed alpha
Helix 26
AC8
B
278 283Right-handed alpha
Helix 27
AC9
B
297 314Right-handed alpha
Helix 28
AD1
C
60 70Right-handed alpha
Helix 29
AD2
C
79 87Right-handed alpha
Helix 30
AD3
C
106 113Right-handed alpha
Helix 31
AD4
C
121 126Right-handed 310
Helix 32
AD5
C
127 132Right-handed alpha
Helix 33
AD6
C
149 165Right-handed alpha
Helix 34
AD7
C
166 193Right-handed alpha
Helix 35
AD8
C
217 226Right-handed alpha
Helix 36
AD9
C
237 239Right-handed 310
Helix 37
AE1
C
247 252Right-handed 310
Helix 38
AE2
C
265 271Right-handed alpha
Helix 39
AE3
C
272 277Right-handed alpha
Helix 40
AE4
C
278 283Right-handed alpha
Helix 41
AE5
C
297 314Right-handed alpha
Helix 42
AE6
D
60 70Right-handed alpha
Helix 43
AE7
D
79 87Right-handed alpha
Helix 44
AE8
D
106 113Right-handed alpha
Helix 45
AE9
D
123 126Right-handed 310
Helix 46
AF1
D
127 132Right-handed alpha
Helix 47
AF2
D
149 164Right-handed alpha
Helix 48
AF3
D
166 190Right-handed alpha
Helix 49
AF4
D
217 226Right-handed alpha
Helix 50
AF5
D
237 239Right-handed 310
Helix 51
AF6
D
247 251Right-handed 310
Helix 52
AF7
D
265 271Right-handed alpha
Helix 53
AF8
D
272 277Right-handed alpha
Helix 54
AF9
D
278 283Right-handed alpha
Helix 55
AG1
D
297 314Right-handed alpha
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There are 14 sheets in PDB entry 5GGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
117 120parallel
Strand 3
A
137 139parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
97 98parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
198 206parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
241 245anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
198 206parallel
Strand 3
A
256 260parallel
Strand 4
A
286 289parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
117 120parallel
Strand 3
B
137 139parallel
Strand 4
D
137 140anti-parallel
Strand 5
D
117 121parallel
Strand 6
D
56 58parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 77first strand
Strand 2
B
97 98parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
198 206parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
241 245anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
198 206parallel
Strand 3
B
256 260parallel
Strand 4
B
286 289parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 58first strand
Strand 2
C
117 120parallel
Strand 3
C
137 139parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 77first strand
Strand 2
C
97 98parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
198 206parallel
Strand 3
C
209 213anti-parallel
Strand 4
C
241 245anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
198 206parallel
Strand 3
C
256 260parallel
Strand 4
C
286 289parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 77first strand
Strand 2
D
97 98parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 245first strand
Strand 2
D
209 213anti-parallel
Strand 3
D
199 206anti-parallel
Strand 4
D
256 260parallel
Strand 5
D
286 289parallel
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