Analysis of interatomic Contacts of Structural Units in PDB entry:
5GGY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GGY entry

There are 2 chains in PDB entry 5GGY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 53SER 319
N
 HIS 53GLN 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5GGY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 70Right-handed alpha
Helix 2
AA2
A
79 87Right-handed alpha
Helix 3
AA3
A
106 113Right-handed alpha
Helix 4
AA4
A
121 126Right-handed 310
Helix 5
AA5
A
127 133Right-handed alpha
Helix 6
AA6
A
148 164Right-handed alpha
Helix 7
AA7
A
166 192Right-handed alpha
Helix 8
AA8
A
217 226Right-handed alpha
Helix 9
AA9
A
237 239Right-handed 310
Helix 10
AB1
A
247 252Right-handed 310
Helix 11
AB2
A
265 272Right-handed alpha
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
298 314Right-handed alpha
Helix 15
AB6
N
60 71Right-handed alpha
Helix 16
AB7
N
79 87Right-handed alpha
Helix 17
AB8
N
106 113Right-handed alpha
Helix 18
AB9
N
121 125Right-handed 310
Helix 19
AC1
N
127 133Right-handed alpha
Helix 20
AC2
N
151 164Right-handed alpha
Helix 21
AC3
N
166 193Right-handed alpha
Helix 22
AC4
N
217 226Right-handed alpha
Helix 23
AC5
N
237 239Right-handed 310
Helix 24
AC6
N
247 252Right-handed 310
Helix 25
AC7
N
265 272Right-handed alpha
Helix 26
AC8
N
272 277Right-handed alpha
Helix 27
AC9
N
278 284Right-handed alpha
Helix 28
AD1
N
298 315Right-handed alpha
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There are 8 sheets in PDB entry 5GGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
117 120parallel
Strand 3
A
137 139parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
97 98parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
198 206parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
241 245anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
198 206parallel
Strand 3
A
256 260parallel
Strand 4
A
286 289parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
56 58first strand
Strand 2
N
117 120parallel
Strand 3
N
137 139parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
76 77first strand
Strand 2
N
97 98parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
229 230first strand
Strand 2
N
198 206parallel
Strand 3
N
209 213anti-parallel
Strand 4
N
241 245anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
229 230first strand
Strand 2
N
198 206parallel
Strand 3
N
256 260parallel
Strand 4
N
286 289parallel
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