Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GHA entry

There are 8 chains in PDB entry 5GHA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ALA 320
D	VAL 2	ARG 319
B	VAL 2	ARG 319
C	VAL 2	ALA 320
E	ARG 2	SER 63
H	HIS 0	SER 63
F	LEU -6	ILE 62
G	VAL 4	SER 63

There are 58 helices in PDB entry 5GHA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	41	Right-handed alpha
Helix 2	AA2	A	57	70	Right-handed alpha
Helix 3	AA3	A	83	100	Right-handed alpha
Helix 4	AA4	A	110	115	Right-handed alpha
Helix 5	AA5	A	117	126	Right-handed alpha
Helix 6	AA6	A	128	148	Right-handed alpha
Helix 7	AA7	A	158	172	Right-handed alpha
Helix 8	AA8	A	202	214	Right-handed alpha
Helix 9	AA9	A	229	244	Right-handed alpha
Helix 10	AB1	A	246	259	Right-handed alpha
Helix 11	AB2	A	260	263	Right-handed 310
Helix 12	AB3	A	286	302	Right-handed alpha
Helix 13	AB4	D	22	42	Right-handed alpha
Helix 14	AB5	D	57	70	Right-handed alpha
Helix 15	AB6	D	83	100	Right-handed alpha
Helix 16	AB7	D	110	115	Right-handed alpha
Helix 17	AB8	D	117	126	Right-handed alpha
Helix 18	AB9	D	128	148	Right-handed alpha
Helix 19	AC1	D	158	172	Right-handed alpha
Helix 20	AC2	D	202	214	Right-handed alpha
Helix 21	AC3	D	222	226	Right-handed 310
Helix 22	AC4	D	228	244	Right-handed alpha
Helix 23	AC5	D	246	258	Right-handed alpha
Helix 24	AC6	D	259	263	Right-handed 310
Helix 25	AC7	D	286	302	Right-handed alpha
Helix 26	AC8	B	15	18	Right-handed 310
Helix 27	AC9	B	22	42	Right-handed alpha
Helix 28	AD1	B	57	70	Right-handed alpha
Helix 29	AD2	B	83	101	Right-handed alpha
Helix 30	AD3	B	110	115	Right-handed alpha
Helix 31	AD4	B	117	126	Right-handed alpha
Helix 32	AD5	B	128	148	Right-handed alpha
Helix 33	AD6	B	158	172	Right-handed alpha
Helix 34	AD7	B	202	214	Right-handed alpha
Helix 35	AD8	B	228	244	Right-handed alpha
Helix 36	AD9	B	246	258	Right-handed alpha
Helix 37	AE1	B	259	263	Right-handed 310
Helix 38	AE2	B	286	301	Right-handed alpha
Helix 39	AE3	C	22	41	Right-handed alpha
Helix 40	AE4	C	57	70	Right-handed alpha
Helix 41	AE5	C	83	101	Right-handed alpha
Helix 42	AE6	C	110	115	Right-handed alpha
Helix 43	AE7	C	117	126	Right-handed alpha
Helix 44	AE8	C	128	148	Right-handed alpha
Helix 45	AE9	C	158	172	Right-handed alpha
Helix 46	AF1	C	202	214	Right-handed alpha
Helix 47	AF2	C	229	244	Right-handed alpha
Helix 48	AF3	C	246	259	Right-handed alpha
Helix 49	AF4	C	260	263	Right-handed 310
Helix 50	AF5	C	286	302	Right-handed alpha
Helix 51	AF6	E	21	28	Right-handed alpha
Helix 52	AF7	E	31	33	Right-handed 310
Helix 53	AF8	H	21	28	Right-handed alpha
Helix 54	AF9	H	31	33	Right-handed 310
Helix 55	AG1	F	-5	-1	Right-handed alpha
Helix 56	AG2	F	21	28	Right-handed alpha
Helix 57	AG3	F	31	33	Right-handed 310
Helix 58	AG4	G	21	29	Right-handed alpha

There are 20 sheets in PDB entry 5GHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	109	first strand
Strand 2	A	73	80	parallel
Strand 3	A	49	53	parallel
Strand 4	A	152	154	parallel
Strand 5	A	193	195	parallel
Strand 6	A	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	109	first strand
Strand 2	D	73	80	parallel
Strand 3	D	49	53	parallel
Strand 4	D	152	154	parallel
Strand 5	D	193	195	parallel
Strand 6	D	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	109	first strand
Strand 2	B	73	80	parallel
Strand 3	B	49	53	parallel
Strand 4	B	152	154	parallel
Strand 5	B	193	195	parallel
Strand 6	B	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	B	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	19	21	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	109	first strand
Strand 2	C	73	80	parallel
Strand 3	C	49	53	parallel
Strand 4	C	152	154	parallel
Strand 5	C	193	195	parallel
Strand 6	C	184	185	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	273	first strand
Strand 2	C	280	281	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	3	6	anti-parallel
Strand 3	E	56	60	parallel
Strand 4	E	35	39	anti-parallel
Strand 5	E	42	43	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	2	6	anti-parallel
Strand 3	H	55	60	parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	42	44	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	20	first strand
Strand 2	H	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	15	first strand
Strand 2	F	1	6	anti-parallel
Strand 3	F	55	60	parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	42	43	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	58	60	parallel
Strand 3	G	35	39	anti-parallel
Strand 4	G	42	44	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	20	first strand
Strand 2	G	49	50	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GHA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHA