Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GHF entry

There are 2 chains in PDB entry 5GHF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ARG 456
B
 LEU 32THR 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5GHF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
22 30Right-handed alpha
Helix 3
AA3
A
54 59Right-handed alpha
Helix 4
AA4
A
66 78Right-handed alpha
Helix 5
AA5
A
93 105Right-handed alpha
Helix 6
AA6
A
117 136Right-handed alpha
Helix 7
AA7
A
155 162Right-handed alpha
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
185 190Right-handed alpha
Helix 10
AB1
A
195 215Right-handed alpha
Helix 11
AB2
A
239 251Right-handed alpha
Helix 12
AB3
A
271 276Right-handed alpha
Helix 13
AB4
A
286 290Right-handed 310
Helix 14
AB5
A
302 307Right-handed alpha
Helix 15
AB6
A
308 310Right-handed 310
Helix 16
AB7
A
328 345Right-handed alpha
Helix 17
AB8
A
346 364Right-handed alpha
Helix 18
AB9
A
399 412Right-handed alpha
Helix 19
AC1
A
432 456Right-handed alpha
Helix 20
AC2
B
54 59Right-handed alpha
Helix 21
AC3
B
66 80Right-handed alpha
Helix 22
AC4
B
92 104Right-handed alpha
Helix 23
AC5
B
117 136Right-handed alpha
Helix 24
AC6
B
155 162Right-handed alpha
Helix 25
AC7
B
164 168Right-handed 310
Helix 26
AC8
B
185 190Right-handed alpha
Helix 27
AC9
B
195 215Right-handed alpha
Helix 28
AD1
B
239 252Right-handed alpha
Helix 29
AD2
B
271 276Right-handed alpha
Helix 30
AD3
B
286 290Right-handed 310
Helix 31
AD4
B
302 317Right-handed alpha
Helix 32
AD5
B
328 345Right-handed alpha
Helix 33
AD6
B
346 364Right-handed alpha
Helix 34
AD7
B
399 412Right-handed alpha
Helix 35
AD8
B
432 455Right-handed alpha
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There are 6 sheets in PDB entry 5GHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
49 52parallel
Strand 3
A
41 44anti-parallel
Strand 4
A
32 38anti-parallel
Strand 5
B
89 91parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
297 301anti-parallel
Strand 3
A
282 285anti-parallel
Strand 4
A
254 258parallel
Strand 5
A
219 224parallel
Strand 6
A
143 147parallel
Strand 7
A
178 181parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 377first strand
Strand 2
A
380 385anti-parallel
Strand 3
A
422 425anti-parallel
Strand 4
A
417 419anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
41 44anti-parallel
Strand 3
B
49 52anti-parallel
Strand 4
B
414 415parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 115first strand
Strand 2
B
297 301anti-parallel
Strand 3
B
282 285anti-parallel
Strand 4
B
254 258parallel
Strand 5
B
219 224parallel
Strand 6
B
143 147parallel
Strand 7
B
178 181parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 377first strand
Strand 2
B
380 385anti-parallel
Strand 3
B
422 425anti-parallel
Strand 4
B
417 419anti-parallel
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