Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GHL entry

There are 4 chains in PDB entry 5GHL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 509	ARG 616
B	CYS 509	ARG 616
C	CYS 509	ARG 616
D	CYS 509	ARG 616

There are 8 helices in PDB entry 5GHL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	537	541	Right-handed 310
Helix 2	AA2	A	544	548	Right-handed 310
Helix 3	AA3	B	537	541	Right-handed 310
Helix 4	AA4	B	544	548	Right-handed 310
Helix 5	AA5	C	537	541	Right-handed 310
Helix 6	AA6	C	544	548	Right-handed 310
Helix 7	AA7	D	537	541	Right-handed 310
Helix 8	AA8	D	544	548	Right-handed 310

There are 12 sheets in PDB entry 5GHL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	570	first strand
Strand 2	A	514	522	anti-parallel
Strand 3	A	608	614	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	530	535	anti-parallel
Strand 3	A	574	582	anti-parallel
Strand 4	A	588	590	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	549	550	first strand
Strand 2	A	530	535	anti-parallel
Strand 3	A	574	582	anti-parallel
Strand 4	A	596	599	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	570	first strand
Strand 2	B	514	522	anti-parallel
Strand 3	B	608	614	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	550	first strand
Strand 2	B	530	535	anti-parallel
Strand 3	B	574	582	anti-parallel
Strand 4	B	588	590	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	549	550	first strand
Strand 2	B	530	535	anti-parallel
Strand 3	B	574	582	anti-parallel
Strand 4	B	596	599	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	562	570	first strand
Strand 2	C	514	522	anti-parallel
Strand 3	C	608	614	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	550	first strand
Strand 2	C	530	535	anti-parallel
Strand 3	C	574	582	anti-parallel
Strand 4	C	588	590	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	550	first strand
Strand 2	C	530	535	anti-parallel
Strand 3	C	574	582	anti-parallel
Strand 4	C	596	599	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	562	570	first strand
Strand 2	D	514	522	anti-parallel
Strand 3	D	608	614	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	549	550	first strand
Strand 2	D	530	535	anti-parallel
Strand 3	D	574	582	anti-parallel
Strand 4	D	588	590	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	549	550	first strand
Strand 2	D	530	535	anti-parallel
Strand 3	D	574	582	anti-parallel
Strand 4	D	596	599	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GHL

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHL