Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GHS entry

There are 4 chains in PDB entry 5GHS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 464
B
 MET 1PHE 345
C
 GLU 133LEU 188
D
 HIS 118LEU 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5GHS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 23Right-handed alpha
Helix 2
AA2
A
34 51Right-handed alpha
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
A
85 87Right-handed 310
Helix 5
AA5
A
88 96Right-handed alpha
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
136 149Right-handed alpha
Helix 8
AA8
A
150 154Right-handed 310
Helix 9
AA9
A
155 166Right-handed alpha
Helix 10
AB1
A
176 189Right-handed alpha
Helix 11
AB2
A
206 213Right-handed alpha
Helix 12
AB3
A
225 236Right-handed alpha
Helix 13
AB4
A
243 247Right-handed 310
Helix 14
AB5
A
248 266Right-handed alpha
Helix 15
AB6
A
269 275Right-handed alpha
Helix 16
AB7
A
290 293Right-handed 310
Helix 17
AB8
A
294 308Right-handed alpha
Helix 18
AB9
A
310 319Right-handed alpha
Helix 19
AC1
A
321 349Right-handed alpha
Helix 20
AC2
A
350 353Right-handed 310
Helix 21
AC3
A
372 382Right-handed alpha
Helix 22
AC4
A
412 417Right-handed alpha
Helix 23
AC5
A
421 434Right-handed alpha
Helix 24
AC6
A
452 462Right-handed alpha
Helix 25
AC7
B
2 23Right-handed alpha
Helix 26
AC8
B
34 51Right-handed alpha
Helix 27
AC9
B
64 74Right-handed alpha
Helix 28
AD1
B
85 87Right-handed 310
Helix 29
AD2
B
88 96Right-handed alpha
Helix 30
AD3
B
124 128Right-handed 310
Helix 31
AD4
B
136 149Right-handed alpha
Helix 32
AD5
B
150 154Right-handed 310
Helix 33
AD6
B
155 166Right-handed alpha
Helix 34
AD7
B
176 189Right-handed alpha
Helix 35
AD8
B
206 213Right-handed alpha
Helix 36
AD9
B
225 236Right-handed alpha
Helix 37
AE1
B
243 247Right-handed 310
Helix 38
AE2
B
248 266Right-handed alpha
Helix 39
AE3
B
269 275Right-handed alpha
Helix 40
AE4
B
290 293Right-handed 310
Helix 41
AE5
B
294 308Right-handed alpha
Helix 42
AE6
B
310 319Right-handed alpha
Helix 43
AE7
B
321 345Right-handed alpha
Helix 44
AE8
C
169 178Right-handed alpha
Helix 45
AE9
D
169 177Right-handed alpha
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There are 7 sheets in PDB entry 5GHS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 122first strand
Strand 2
A
100 104parallel
Strand 3
A
78 82parallel
Strand 4
A
26 32parallel
Strand 5
A
54 60parallel
Strand 6
C
164 168anti-parallel
Strand 7
C
136 141anti-parallel
Strand 8
C
181 184anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
277 282anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
360 363anti-parallel
Strand 3
A
393 397parallel
Strand 4
A
404 409anti-parallel
Strand 5
A
445 449anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 122first strand
Strand 2
B
100 104parallel
Strand 3
B
78 82parallel
Strand 4
B
26 32parallel
Strand 5
B
54 60parallel
Strand 6
D
163 168anti-parallel
Strand 7
D
136 141anti-parallel
Strand 8
D
181 183anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 197first strand
Strand 2
B
277 282anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
148 149first strand
Strand 2
C
155 156anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
148 149first strand
Strand 2
D
155 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il