Analysis of interatomic Contacts of Structural Units in PDB entry:
5GHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GHT entry

There is 1 chain in PDB entry 5GHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5GHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 23Right-handed alpha
Helix 2
AA2
A
34 51Right-handed alpha
Helix 3
AA3
A
64 73Right-handed alpha
Helix 4
AA4
A
88 96Right-handed alpha
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
136 149Right-handed alpha
Helix 7
AA7
A
150 154Right-handed 310
Helix 8
AA8
A
155 166Right-handed alpha
Helix 9
AA9
A
177 188Right-handed alpha
Helix 10
AB1
A
206 213Right-handed alpha
Helix 11
AB2
A
225 236Right-handed alpha
Helix 12
AB3
A
243 247Right-handed 310
Helix 13
AB4
A
248 266Right-handed alpha
Helix 14
AB5
A
269 276Right-handed alpha
Helix 15
AB6
A
294 308Right-handed alpha
Helix 16
AB7
A
310 320Right-handed alpha
Helix 17
AB8
A
321 349Right-handed alpha
Helix 18
AB9
A
350 353Right-handed 310
Helix 19
AC1
A
369 371Right-handed 310
Helix 20
AC2
A
372 383Right-handed alpha
Helix 21
AC3
A
412 417Right-handed alpha
Helix 22
AC4
A
421 434Right-handed alpha
Helix 23
AC5
A
452 466Right-handed alpha
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There are 3 sheets in PDB entry 5GHT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
27 32parallel
Strand 3
A
78 82parallel
Strand 4
A
100 104parallel
Strand 5
A
119 122parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
277 282anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
392 397parallel
Strand 4
A
404 410anti-parallel
Strand 5
A
443 449anti-parallel
Strand 6
A
436 439anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il