Analysis of interatomic Contacts of Structural Units in PDB entry:
5GI4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GI4 entry

There are 2 chains in PDB entry 5GI4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 218ASP 443
B
 PRO 218ALA 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5GI4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 243Right-handed alpha
Helix 2
AA2
A
254 267Right-handed alpha
Helix 3
AA3
A
281 293Right-handed alpha
Helix 4
AA4
A
303 307Right-handed 310
Helix 5
AA5
A
325 334Right-handed alpha
Helix 6
AA6
A
335 336Right-handed 310
Helix 7
AA7
A
337 341Right-handed 310
Helix 8
AA8
A
350 352Right-handed 310
Helix 9
AA9
A
353 364Right-handed alpha
Helix 10
AB1
A
375 396Right-handed alpha
Helix 11
AB2
A
399 407Right-handed alpha
Helix 12
AB3
A
408 410Right-handed 310
Helix 13
AB4
A
421 433Right-handed alpha
Helix 14
AB5
B
231 243Right-handed alpha
Helix 15
AB6
B
254 267Right-handed alpha
Helix 16
AB7
B
280 293Right-handed alpha
Helix 17
AB8
B
325 334Right-handed alpha
Helix 18
AB9
B
350 352Right-handed 310
Helix 19
AC1
B
353 364Right-handed alpha
Helix 20
AC2
B
375 396Right-handed alpha
Helix 21
AC3
B
399 411Right-handed alpha
Helix 22
AC4
B
420 433Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5GI4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 226first strand
Strand 2
A
344 349parallel
Strand 3
A
314 319parallel
Strand 4
A
247 251parallel
Strand 5
A
298 301parallel
Strand 6
A
272 275parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 226first strand
Strand 2
B
343 349parallel
Strand 3
B
314 319parallel
Strand 4
B
247 251parallel
Strand 5
B
298 301parallel
Strand 6
B
272 275parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il