Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GIE entry

There are 4 chains in PDB entry 5GIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 117GLY 419
C
 ASN 626LYS 635
D
 LEU 124GLY 419
E
 ASN 626LYS 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5GIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 143Right-handed alpha
Helix 2
AA2
A
147 153Right-handed 310
Helix 3
AA3
A
222 242Right-handed alpha
Helix 4
AA4
A
246 250Right-handed 310
Helix 5
AA5
A
251 272Right-handed alpha
Helix 6
AA6
A
292 297Right-handed alpha
Helix 7
AA7
A
302 319Right-handed alpha
Helix 8
AA8
A
322 335Right-handed alpha
Helix 9
AA9
A
344 367Right-handed alpha
Helix 10
AB1
A
374 403Right-handed alpha
Helix 11
AB2
A
403 408Right-handed alpha
Helix 12
AB3
A
411 419Right-handed alpha
Helix 13
AB4
C
627 634Right-handed alpha
Helix 14
AB5
D
125 143Right-handed alpha
Helix 15
AB6
D
147 153Right-handed 310
Helix 16
AB7
D
222 243Right-handed alpha
Helix 17
AB8
D
246 250Right-handed 310
Helix 18
AB9
D
251 271Right-handed alpha
Helix 19
AC1
D
292 297Right-handed alpha
Helix 20
AC2
D
303 319Right-handed alpha
Helix 21
AC3
D
322 335Right-handed alpha
Helix 22
AC4
D
344 367Right-handed alpha
Helix 23
AC5
D
374 402Right-handed alpha
Helix 24
AC6
D
403 408Right-handed alpha
Helix 25
AC7
D
411 419Right-handed alpha
Helix 26
AC8
E
627 635Right-handed alpha
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There are 2 sheets in PDB entry 5GIE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 276first strand
Strand 2
A
281 283anti-parallel
Strand 3
A
290 291anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
275 276first strand
Strand 2
D
281 283anti-parallel
Strand 3
D
290 291anti-parallel
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