Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GIJ entry

There are 4 chains in PDB entry 5GIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 31LEU 637
D
 HIS 1VAL 3
D
 SER 5GLY 6
D
 ASN 8ASN 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5GIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
33 45Right-handed alpha
Helix 2
AA2
B
66 71Right-handed 310
Helix 3
AA3
B
98 104Right-handed 310
Helix 4
AA4
B
122 128Right-handed 310
Helix 5
AA5
B
146 152Right-handed 310
Helix 6
AA6
B
170 176Right-handed 310
Helix 7
AA7
B
194 200Right-handed 310
Helix 8
AA8
B
218 224Right-handed 310
Helix 9
AA9
B
242 248Right-handed 310
Helix 10
AB1
B
266 272Right-handed 310
Helix 11
AB2
B
290 296Right-handed 310
Helix 12
AB3
B
314 320Right-handed 310
Helix 13
AB4
B
338 344Right-handed 310
Helix 14
AB5
B
364 369Right-handed 310
Helix 15
AB6
B
410 416Right-handed 310
Helix 16
AB7
B
436 440Right-handed 310
Helix 17
AB8
B
458 464Right-handed 310
Helix 18
AB9
B
484 488Right-handed 310
Helix 19
AC1
B
529 535Right-handed 310
Helix 20
AC2
B
553 559Right-handed 310
Helix 21
AC3
B
577 583Right-handed 310
Helix 22
AC4
B
603 608Right-handed 310
Helix 23
AC5
B
609 614Right-handed 310
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There are 7 sheets in PDB entry 5GIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
94 95anti-parallel
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There are 23 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
83 87anti-parallel
Strand 3
B
109 111parallel
Strand 4
B
133 135parallel
Strand 5
B
157 159parallel
Strand 6
B
181 183parallel
Strand 7
B
205 207parallel
Strand 8
B
229 231parallel
Strand 9
B
253 255parallel
Strand 10
B
277 279parallel
Strand 11
B
301 303parallel
Strand 12
B
325 327parallel
Strand 13
B
349 351parallel
Strand 14
B
373 375parallel
Strand 15
B
397 399parallel
Strand 16
B
421 423parallel
Strand 17
B
445 447parallel
Strand 18
B
469 471parallel
Strand 19
B
493 495parallel
Strand 20
B
516 518parallel
Strand 21
B
540 542parallel
Strand 22
B
564 566parallel
Strand 23
B
588 590parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 120first strand
Strand 2
B
140 142parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
284 286parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 383first strand
Strand 2
B
404 408parallel
Strand 3
B
428 430parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
549 550first strand
Strand 2
B
571 572parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
597 599first strand
Strand 2
B
618 620parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il