Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GIO entry

There are 15 chains in PDB entry 5GIO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LYS 377
C	ALA 7	THR 128
E	ILE 5	LYS 231
B	LYS 3	LYS 377
D	ALA 7	THR 128
F	ILE 5	LYS 231
G	G 1	A 35
H	U 9	C 40
I	C 1	U 10
J	C 1	U 10
N	U 6	C 36
O	C 1	U 10
K	LYS 3	LYS 377
L	ALA 7	THR 128
M	ILE 5	LYS 231

There are105 helices in PDB entry 5GIO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	43	Right-handed alpha
Helix 2	AA2	A	48	58	Right-handed alpha
Helix 3	AA3	A	70	76	Right-handed alpha
Helix 4	AA4	A	87	96	Right-handed alpha
Helix 5	AA5	A	99	104	Right-handed alpha
Helix 6	AA6	A	110	134	Right-handed alpha
Helix 7	AA7	A	136	166	Right-handed alpha
Helix 8	AA8	A	167	168	Right-handed 310
Helix 9	AA9	A	169	173	Right-handed 310
Helix 10	AB1	A	178	189	Right-handed alpha
Helix 11	AB2	A	191	195	Right-handed 310
Helix 12	AB3	A	196	202	Right-handed alpha
Helix 13	AB4	A	206	219	Right-handed alpha
Helix 14	AB5	A	226	262	Right-handed alpha
Helix 15	AB6	A	262	270	Right-handed alpha
Helix 16	AB7	A	270	282	Right-handed alpha
Helix 17	AB8	A	283	289	Right-handed alpha
Helix 18	AB9	A	291	296	Right-handed alpha
Helix 19	AC1	A	300	311	Right-handed alpha
Helix 20	AC2	A	318	322	Right-handed 310
Helix 21	AC3	A	323	329	Right-handed alpha
Helix 22	AC4	A	330	354	Right-handed alpha
Helix 23	AC5	A	359	376	Right-handed alpha
Helix 24	AC6	C	15	33	Right-handed alpha
Helix 25	AC7	C	38	48	Right-handed alpha
Helix 26	AC8	C	62	66	Right-handed 310
Helix 27	AC9	C	67	76	Right-handed alpha
Helix 28	AD1	C	85	93	Right-handed alpha
Helix 29	AD2	C	110	124	Right-handed alpha
Helix 30	AD3	E	59	67	Right-handed alpha
Helix 31	AD4	E	88	99	Right-handed alpha
Helix 32	AD5	E	110	124	Right-handed alpha
Helix 33	AD6	E	136	140	Right-handed 310
Helix 34	AD7	E	158	170	Right-handed alpha
Helix 35	AD8	E	183	187	Right-handed alpha
Helix 36	AD9	E	191	206	Right-handed alpha
Helix 37	AE1	B	31	44	Right-handed alpha
Helix 38	AE2	B	48	58	Right-handed alpha
Helix 39	AE3	B	70	76	Right-handed alpha
Helix 40	AE4	B	87	96	Right-handed alpha
Helix 41	AE5	B	99	104	Right-handed alpha
Helix 42	AE6	B	110	134	Right-handed alpha
Helix 43	AE7	B	136	166	Right-handed alpha
Helix 44	AE8	B	167	168	Right-handed 310
Helix 45	AE9	B	169	173	Right-handed 310
Helix 46	AF1	B	178	189	Right-handed alpha
Helix 47	AF2	B	191	195	Right-handed 310
Helix 48	AF3	B	196	202	Right-handed alpha
Helix 49	AF4	B	206	219	Right-handed alpha
Helix 50	AF5	B	226	262	Right-handed alpha
Helix 51	AF6	B	262	282	Right-handed alpha
Helix 52	AF7	B	283	289	Right-handed alpha
Helix 53	AF8	B	291	296	Right-handed alpha
Helix 54	AF9	B	300	311	Right-handed alpha
Helix 55	AG1	B	318	322	Right-handed 310
Helix 56	AG2	B	323	329	Right-handed alpha
Helix 57	AG3	B	330	354	Right-handed alpha
Helix 58	AG4	B	359	376	Right-handed alpha
Helix 59	AG5	D	15	33	Right-handed alpha
Helix 60	AG6	D	38	48	Right-handed alpha
Helix 61	AG7	D	62	66	Right-handed 310
Helix 62	AG8	D	67	76	Right-handed alpha
Helix 63	AG9	D	85	93	Right-handed alpha
Helix 64	AH1	D	110	124	Right-handed alpha
Helix 65	AH2	F	59	67	Right-handed alpha
Helix 66	AH3	F	88	99	Right-handed alpha
Helix 67	AH4	F	110	123	Right-handed alpha
Helix 68	AH5	F	158	170	Right-handed alpha
Helix 69	AH6	F	184	186	Right-handed 310
Helix 70	AH7	F	191	206	Right-handed alpha
Helix 71	AH8	K	31	44	Right-handed alpha
Helix 72	AH9	K	48	58	Right-handed alpha
Helix 73	AI1	K	69	77	Right-handed alpha
Helix 74	AI2	K	87	96	Right-handed alpha
Helix 75	AI3	K	99	104	Right-handed alpha
Helix 76	AI4	K	109	134	Right-handed alpha
Helix 77	AI5	K	136	166	Right-handed alpha
Helix 78	AI6	K	167	168	Right-handed 310
Helix 79	AI7	K	169	176	Right-handed 310
Helix 80	AI8	K	178	189	Right-handed alpha
Helix 81	AI9	K	191	195	Right-handed 310
Helix 82	AJ1	K	196	202	Right-handed alpha
Helix 83	AJ2	K	206	219	Right-handed alpha
Helix 84	AJ3	K	226	262	Right-handed alpha
Helix 85	AJ4	K	262	282	Right-handed alpha
Helix 86	AJ5	K	283	289	Right-handed alpha
Helix 87	AJ6	K	291	296	Right-handed alpha
Helix 88	AJ7	K	300	311	Right-handed alpha
Helix 89	AJ8	K	318	322	Right-handed 310
Helix 90	AJ9	K	323	329	Right-handed alpha
Helix 91	AK1	K	330	354	Right-handed alpha
Helix 92	AK2	K	359	376	Right-handed alpha
Helix 93	AK3	L	15	33	Right-handed alpha
Helix 94	AK4	L	38	48	Right-handed alpha
Helix 95	AK5	L	62	66	Right-handed 310
Helix 96	AK6	L	67	76	Right-handed alpha
Helix 97	AK7	L	85	93	Right-handed alpha
Helix 98	AK8	L	110	124	Right-handed alpha
Helix 99	AK9	M	59	67	Right-handed alpha
Helix 100	AL1	M	88	99	Right-handed alpha
Helix 101	AL2	M	110	124	Right-handed alpha
Helix 102	AL3	M	136	140	Right-handed 310
Helix 103	AL4	M	158	170	Right-handed alpha
Helix 104	AL5	M	183	187	Right-handed alpha
Helix 105	AL6	M	191	206	Right-handed alpha

There are 12 sheets in PDB entry 5GIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	27	first strand
Strand 2	A	12	16	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	A	62	65	parallel
Strand 5	A	80	83	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	53	57	anti-parallel
Strand 4	C	80	83	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	9	first strand
Strand 2	E	15	19	anti-parallel
Strand 3	E	25	30	anti-parallel
Strand 4	E	49	53	anti-parallel
Strand 5	E	43	46	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	130	first strand
Strand 2	E	103	107	parallel
Strand 3	E	79	83	parallel
Strand 4	E	147	152	parallel
Strand 5	E	171	182	parallel
Strand 6	E	223	230	anti-parallel
Strand 7	E	208	215	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	27	first strand
Strand 2	B	12	16	anti-parallel
Strand 3	B	4	9	anti-parallel
Strand 4	B	62	65	parallel
Strand 5	B	80	83	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	101	106	anti-parallel
Strand 3	D	53	57	anti-parallel
Strand 4	D	80	83	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	9	first strand
Strand 2	F	15	19	anti-parallel
Strand 3	F	25	30	anti-parallel
Strand 4	F	49	53	anti-parallel
Strand 5	F	43	46	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	131	first strand
Strand 2	F	103	108	parallel
Strand 3	F	79	83	parallel
Strand 4	F	147	152	parallel
Strand 5	F	171	182	parallel
Strand 6	F	223	230	anti-parallel
Strand 7	F	208	215	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	27	first strand
Strand 2	K	12	16	anti-parallel
Strand 3	K	4	9	anti-parallel
Strand 4	K	62	65	parallel
Strand 5	K	80	83	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	37	first strand
Strand 2	L	101	106	anti-parallel
Strand 3	L	53	57	anti-parallel
Strand 4	L	80	83	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	9	first strand
Strand 2	M	15	19	anti-parallel
Strand 3	M	25	30	anti-parallel
Strand 4	M	49	53	anti-parallel
Strand 5	M	43	46	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	127	130	first strand
Strand 2	M	103	107	parallel
Strand 3	M	79	83	parallel
Strand 4	M	147	152	parallel
Strand 5	M	171	182	parallel
Strand 6	M	223	230	anti-parallel
Strand 7	M	208	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GIO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIO