Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GIP entry

There are 20 chains in PDB entry 5GIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LYS 377
B	LYS 3	LYS 377
C	ALA 7	THR 128
D	ALA 7	THR 128
E	ILE 5	LYS 231
F	ILE 5	LYS 231
G	U 6	A 36
H	U 8	C 37
I	C 1	U 11
J	C 1	U 11
K	LYS 3	LYS 377
L	LYS 3	LYS 377
M	ALA 7	THR 128
N	ALA 7	THR 128
O	ILE 5	LYS 231
P	ILE 5	LYS 231
Q	U 6	A 36
R	U 8	A 36
S	C 1	U 11
T	C 1	U 11

There are146 helices in PDB entry 5GIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	43	Right-handed alpha
Helix 2	AA2	A	48	58	Right-handed alpha
Helix 3	AA3	A	70	76	Right-handed alpha
Helix 4	AA4	A	87	96	Right-handed alpha
Helix 5	AA5	A	99	104	Right-handed alpha
Helix 6	AA6	A	109	134	Right-handed alpha
Helix 7	AA7	A	135	166	Right-handed alpha
Helix 8	AA8	A	167	168	Right-handed 310
Helix 9	AA9	A	169	170	Right-handed 310
Helix 10	AB1	A	171	176	Right-handed alpha
Helix 11	AB2	A	178	189	Right-handed alpha
Helix 12	AB3	A	191	195	Right-handed 310
Helix 13	AB4	A	196	202	Right-handed alpha
Helix 14	AB5	A	206	219	Right-handed alpha
Helix 15	AB6	A	226	262	Right-handed alpha
Helix 16	AB7	A	262	270	Right-handed alpha
Helix 17	AB8	A	270	282	Right-handed alpha
Helix 18	AB9	A	283	289	Right-handed alpha
Helix 19	AC1	A	291	296	Right-handed alpha
Helix 20	AC2	A	300	311	Right-handed alpha
Helix 21	AC3	A	318	322	Right-handed 310
Helix 22	AC4	A	323	328	Right-handed alpha
Helix 23	AC5	A	330	355	Right-handed alpha
Helix 24	AC6	A	359	376	Right-handed alpha
Helix 25	AC7	B	31	44	Right-handed alpha
Helix 26	AC8	B	48	58	Right-handed alpha
Helix 27	AC9	B	70	76	Right-handed alpha
Helix 28	AD1	B	87	96	Right-handed alpha
Helix 29	AD2	B	99	104	Right-handed alpha
Helix 30	AD3	B	109	133	Right-handed alpha
Helix 31	AD4	B	136	166	Right-handed alpha
Helix 32	AD5	B	167	168	Right-handed 310
Helix 33	AD6	B	169	170	Right-handed 310
Helix 34	AD7	B	171	176	Right-handed alpha
Helix 35	AD8	B	178	189	Right-handed alpha
Helix 36	AD9	B	191	195	Right-handed 310
Helix 37	AE1	B	196	202	Right-handed alpha
Helix 38	AE2	B	206	219	Right-handed alpha
Helix 39	AE3	B	226	262	Right-handed alpha
Helix 40	AE4	B	262	270	Right-handed alpha
Helix 41	AE5	B	270	282	Right-handed alpha
Helix 42	AE6	B	283	289	Right-handed alpha
Helix 43	AE7	B	291	296	Right-handed alpha
Helix 44	AE8	B	300	311	Right-handed alpha
Helix 45	AE9	B	318	322	Right-handed 310
Helix 46	AF1	B	323	329	Right-handed alpha
Helix 47	AF2	B	330	355	Right-handed alpha
Helix 48	AF3	B	359	376	Right-handed alpha
Helix 49	AF4	C	15	33	Right-handed alpha
Helix 50	AF5	C	38	48	Right-handed alpha
Helix 51	AF6	C	62	67	Right-handed 310
Helix 52	AF7	C	68	76	Right-handed alpha
Helix 53	AF8	C	85	94	Right-handed alpha
Helix 54	AF9	C	110	125	Right-handed alpha
Helix 55	AG1	D	15	33	Right-handed alpha
Helix 56	AG2	D	38	48	Right-handed alpha
Helix 57	AG3	D	62	66	Right-handed 310
Helix 58	AG4	D	68	76	Right-handed alpha
Helix 59	AG5	D	85	93	Right-handed alpha
Helix 60	AG6	D	110	125	Right-handed alpha
Helix 61	AG7	E	59	67	Right-handed alpha
Helix 62	AG8	E	88	99	Right-handed alpha
Helix 63	AG9	E	110	123	Right-handed alpha
Helix 64	AH1	E	136	140	Right-handed 310
Helix 65	AH2	E	158	170	Right-handed alpha
Helix 66	AH3	E	183	187	Right-handed alpha
Helix 67	AH4	E	191	205	Right-handed alpha
Helix 68	AH5	F	59	67	Right-handed alpha
Helix 69	AH6	F	88	99	Right-handed alpha
Helix 70	AH7	F	110	124	Right-handed alpha
Helix 71	AH8	F	136	140	Right-handed 310
Helix 72	AH9	F	158	170	Right-handed alpha
Helix 73	AI1	F	183	187	Right-handed alpha
Helix 74	AI2	F	191	205	Right-handed alpha
Helix 75	AI3	K	31	44	Right-handed alpha
Helix 76	AI4	K	48	58	Right-handed alpha
Helix 77	AI5	K	70	76	Right-handed alpha
Helix 78	AI6	K	87	96	Right-handed alpha
Helix 79	AI7	K	99	104	Right-handed alpha
Helix 80	AI8	K	109	134	Right-handed alpha
Helix 81	AI9	K	136	166	Right-handed alpha
Helix 82	AJ1	K	167	169	Right-handed 310
Helix 83	AJ2	K	170	176	Right-handed alpha
Helix 84	AJ3	K	178	189	Right-handed alpha
Helix 85	AJ4	K	191	195	Right-handed 310
Helix 86	AJ5	K	196	202	Right-handed alpha
Helix 87	AJ6	K	206	219	Right-handed alpha
Helix 88	AJ7	K	226	262	Right-handed alpha
Helix 89	AJ8	K	262	270	Right-handed alpha
Helix 90	AJ9	K	270	282	Right-handed alpha
Helix 91	AK1	K	283	288	Right-handed alpha
Helix 92	AK2	K	291	296	Right-handed alpha
Helix 93	AK3	K	300	311	Right-handed alpha
Helix 94	AK4	K	318	322	Right-handed 310
Helix 95	AK5	K	323	328	Right-handed alpha
Helix 96	AK6	K	330	355	Right-handed alpha
Helix 97	AK7	K	359	376	Right-handed alpha
Helix 98	AK8	L	31	44	Right-handed alpha
Helix 99	AK9	L	48	58	Right-handed alpha
Helix 100	AL1	L	70	76	Right-handed alpha
Helix 101	AL2	L	87	96	Right-handed alpha
Helix 102	AL3	L	99	104	Right-handed alpha
Helix 103	AL4	L	109	134	Right-handed alpha
Helix 104	AL5	L	136	166	Right-handed alpha
Helix 105	AL6	L	167	168	Right-handed 310
Helix 106	AL7	L	169	173	Right-handed 310
Helix 107	AL8	L	178	189	Right-handed alpha
Helix 108	AL9	L	191	195	Right-handed 310
Helix 109	AM1	L	196	202	Right-handed alpha
Helix 110	AM2	L	206	219	Right-handed alpha
Helix 111	AM3	L	226	262	Right-handed alpha
Helix 112	AM4	L	262	270	Right-handed alpha
Helix 113	AM5	L	270	282	Right-handed alpha
Helix 114	AM6	L	283	289	Right-handed alpha
Helix 115	AM7	L	291	296	Right-handed alpha
Helix 116	AM8	L	300	311	Right-handed alpha
Helix 117	AM9	L	318	322	Right-handed 310
Helix 118	AN1	L	323	328	Right-handed alpha
Helix 119	AN2	L	330	355	Right-handed alpha
Helix 120	AN3	L	359	376	Right-handed alpha
Helix 121	AN4	M	15	33	Right-handed alpha
Helix 122	AN5	M	38	48	Right-handed alpha
Helix 123	AN6	M	62	67	Right-handed 310
Helix 124	AN7	M	68	76	Right-handed alpha
Helix 125	AN8	M	85	94	Right-handed alpha
Helix 126	AN9	M	110	125	Right-handed alpha
Helix 127	AO1	N	15	33	Right-handed alpha
Helix 128	AO2	N	38	48	Right-handed alpha
Helix 129	AO3	N	62	67	Right-handed 310
Helix 130	AO4	N	68	76	Right-handed alpha
Helix 131	AO5	N	85	93	Right-handed alpha
Helix 132	AO6	N	110	125	Right-handed alpha
Helix 133	AO7	O	59	67	Right-handed alpha
Helix 134	AO8	O	88	99	Right-handed alpha
Helix 135	AO9	O	110	124	Right-handed alpha
Helix 136	AP1	O	136	140	Right-handed 310
Helix 137	AP2	O	158	170	Right-handed alpha
Helix 138	AP3	O	183	187	Right-handed alpha
Helix 139	AP4	O	191	205	Right-handed alpha
Helix 140	AP5	P	59	67	Right-handed alpha
Helix 141	AP6	P	88	99	Right-handed alpha
Helix 142	AP7	P	110	124	Right-handed alpha
Helix 143	AP8	P	136	140	Right-handed 310
Helix 144	AP9	P	158	170	Right-handed alpha
Helix 145	AQ1	P	183	187	Right-handed alpha
Helix 146	AQ2	P	191	205	Right-handed alpha

There are 16 sheets in PDB entry 5GIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	27	first strand
Strand 2	A	12	16	anti-parallel
Strand 3	A	4	9	anti-parallel
Strand 4	A	62	65	parallel
Strand 5	A	80	83	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	27	first strand
Strand 2	B	12	16	anti-parallel
Strand 3	B	4	9	anti-parallel
Strand 4	B	62	65	parallel
Strand 5	B	80	83	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	101	106	anti-parallel
Strand 3	C	53	57	anti-parallel
Strand 4	C	80	83	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	101	106	anti-parallel
Strand 3	D	53	57	anti-parallel
Strand 4	D	80	83	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	9	first strand
Strand 2	E	15	19	anti-parallel
Strand 3	E	26	30	anti-parallel
Strand 4	E	49	53	anti-parallel
Strand 5	E	43	46	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	127	131	first strand
Strand 2	E	103	108	parallel
Strand 3	E	79	83	parallel
Strand 4	E	147	152	parallel
Strand 5	E	171	182	parallel
Strand 6	E	223	230	anti-parallel
Strand 7	E	208	215	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	9	first strand
Strand 2	F	15	19	anti-parallel
Strand 3	F	26	30	anti-parallel
Strand 4	F	49	53	anti-parallel
Strand 5	F	43	46	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	127	131	first strand
Strand 2	F	103	108	parallel
Strand 3	F	79	83	parallel
Strand 4	F	147	152	parallel
Strand 5	F	171	182	parallel
Strand 6	F	223	230	anti-parallel
Strand 7	F	208	215	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	22	27	first strand
Strand 2	K	12	16	anti-parallel
Strand 3	K	4	9	anti-parallel
Strand 4	K	62	65	parallel
Strand 5	K	80	83	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	22	27	first strand
Strand 2	L	12	16	anti-parallel
Strand 3	L	4	9	anti-parallel
Strand 4	L	62	65	parallel
Strand 5	L	80	83	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	37	first strand
Strand 2	M	101	106	anti-parallel
Strand 3	M	53	57	anti-parallel
Strand 4	M	80	83	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	34	37	first strand
Strand 2	N	101	106	anti-parallel
Strand 3	N	53	57	anti-parallel
Strand 4	N	80	83	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	6	9	first strand
Strand 2	O	15	19	anti-parallel
Strand 3	O	26	30	anti-parallel
Strand 4	O	49	53	anti-parallel
Strand 5	O	43	46	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	127	130	first strand
Strand 2	O	103	107	parallel
Strand 3	O	79	83	parallel
Strand 4	O	147	152	parallel
Strand 5	O	171	182	parallel
Strand 6	O	223	230	anti-parallel
Strand 7	O	208	215	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	6	9	first strand
Strand 2	P	15	19	anti-parallel
Strand 3	P	26	30	anti-parallel
Strand 4	P	49	53	anti-parallel
Strand 5	P	43	46	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	127	131	first strand
Strand 2	P	103	108	parallel
Strand 3	P	79	83	parallel
Strand 4	P	147	152	parallel
Strand 5	P	171	182	parallel
Strand 6	P	223	230	anti-parallel
Strand 7	P	208	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIP