Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GIV entry

There are 3 chains in PDB entry 5GIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 7	VAL 503
B	THR 3	VAL 503
C	GLN 9	ASP 278

There are159 helices in PDB entry 5GIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	37	Right-handed alpha
Helix 2	AA2	A	39	41	Right-handed 310
Helix 3	AA3	A	42	63	Right-handed alpha
Helix 4	AA4	A	63	76	Right-handed alpha
Helix 5	AA5	A	80	100	Right-handed alpha
Helix 6	AA6	A	101	123	Right-handed alpha
Helix 7	AA7	A	127	148	Right-handed alpha
Helix 8	AA8	A	154	164	Right-handed alpha
Helix 9	AA9	A	168	194	Right-handed alpha
Helix 10	AB1	A	198	203	Right-handed 310
Helix 11	AB2	A	206	222	Right-handed alpha
Helix 12	AB3	A	224	228	Right-handed 310
Helix 13	AB4	A	257	276	Right-handed alpha
Helix 14	AB5	A	291	304	Right-handed alpha
Helix 15	AB6	A	309	324	Right-handed alpha
Helix 16	AB7	A	332	340	Right-handed alpha
Helix 17	AB8	A	348	352	Right-handed 310
Helix 18	AB9	A	356	373	Right-handed alpha
Helix 19	AC1	A	377	379	Right-handed 310
Helix 20	AC2	A	380	394	Right-handed alpha
Helix 21	AC3	A	408	412	Right-handed 310
Helix 22	AC4	A	419	440	Right-handed alpha
Helix 23	AC5	A	442	449	Right-handed alpha
Helix 24	AC6	A	452	463	Right-handed alpha
Helix 25	AC7	A	471	481	Right-handed alpha
Helix 26	AC8	A	486	502	Right-handed alpha
Helix 27	AC9	B	4	37	Right-handed alpha
Helix 28	AD1	B	39	41	Right-handed 310
Helix 29	AD2	B	42	62	Right-handed alpha
Helix 30	AD3	B	63	75	Right-handed alpha
Helix 31	AD4	B	80	100	Right-handed alpha
Helix 32	AD5	B	101	123	Right-handed alpha
Helix 33	AD6	B	127	148	Right-handed alpha
Helix 34	AD7	B	154	164	Right-handed alpha
Helix 35	AD8	B	168	194	Right-handed alpha
Helix 36	AD9	B	198	203	Right-handed 310
Helix 37	AE1	B	206	222	Right-handed alpha
Helix 38	AE2	B	224	228	Right-handed 310
Helix 39	AE3	B	257	276	Right-handed alpha
Helix 40	AE4	B	291	304	Right-handed alpha
Helix 41	AE5	B	309	324	Right-handed alpha
Helix 42	AE6	B	332	340	Right-handed alpha
Helix 43	AE7	B	348	352	Right-handed 310
Helix 44	AE8	B	356	373	Right-handed alpha
Helix 45	AE9	B	377	379	Right-handed 310
Helix 46	AF1	B	380	394	Right-handed alpha
Helix 47	AF2	B	408	412	Right-handed 310
Helix 48	AF3	B	419	440	Right-handed alpha
Helix 49	AF4	B	442	449	Right-handed alpha
Helix 50	AF5	B	452	463	Right-handed alpha
Helix 51	AF6	B	471	481	Right-handed alpha
Helix 52	AF7	B	486	502	Right-handed alpha
Helix 53	AF8	C	10	37	Right-handed alpha
Helix 54	AF9	C	39	41	Right-handed 310
Helix 55	AG1	C	42	62	Right-handed alpha
Helix 56	AG2	C	63	75	Right-handed alpha
Helix 57	AG3	C	80	100	Right-handed alpha
Helix 58	AG4	C	101	123	Right-handed alpha
Helix 59	AG5	C	127	148	Right-handed alpha
Helix 60	AG6	C	154	164	Right-handed alpha
Helix 61	AG7	C	168	194	Right-handed alpha
Helix 62	AG8	C	198	203	Right-handed 310
Helix 63	AG9	C	206	222	Right-handed alpha
Helix 64	AH1	C	224	228	Right-handed 310
Helix 65	AH2	C	257	277	Right-handed alpha
Helix 66	AH3	C	278	282	Right-handed 310
Helix 67	AH4	C	291	304	Right-handed alpha
Helix 68	AH5	C	309	324	Right-handed alpha
Helix 69	AH6	C	332	340	Right-handed alpha
Helix 70	AH7	C	348	352	Right-handed 310
Helix 71	AH8	C	356	373	Right-handed alpha
Helix 72	AH9	C	377	379	Right-handed 310
Helix 73	AI1	C	380	394	Right-handed alpha
Helix 74	AI2	C	408	412	Right-handed 310
Helix 75	AI3	C	419	440	Right-handed alpha
Helix 76	AI4	C	442	449	Right-handed alpha
Helix 77	AI5	C	452	463	Right-handed alpha
Helix 78	AI6	C	471	481	Right-handed alpha
Helix 79	AI7	C	486	502	Right-handed alpha
Helix 80	AI8	D	8	37	Right-handed alpha
Helix 81	AI9	D	39	41	Right-handed 310
Helix 82	AJ1	D	42	62	Right-handed alpha
Helix 83	AJ2	D	63	76	Right-handed alpha
Helix 84	AJ3	D	80	100	Right-handed alpha
Helix 85	AJ4	D	101	123	Right-handed alpha
Helix 86	AJ5	D	127	148	Right-handed alpha
Helix 87	AJ6	D	154	164	Right-handed alpha
Helix 88	AJ7	D	168	194	Right-handed alpha
Helix 89	AJ8	D	198	203	Right-handed 310
Helix 90	AJ9	D	206	222	Right-handed alpha
Helix 91	AK1	D	224	228	Right-handed 310
Helix 92	AK2	D	257	277	Right-handed alpha
Helix 93	AK3	D	278	282	Right-handed 310
Helix 94	AK4	D	291	304	Right-handed alpha
Helix 95	AK5	D	309	324	Right-handed alpha
Helix 96	AK6	D	332	340	Right-handed alpha
Helix 97	AK7	D	348	352	Right-handed 310
Helix 98	AK8	D	356	373	Right-handed alpha
Helix 99	AK9	D	377	379	Right-handed 310
Helix 100	AL1	D	380	394	Right-handed alpha
Helix 101	AL2	D	408	413	Right-handed alpha
Helix 102	AL3	D	419	440	Right-handed alpha
Helix 103	AL4	D	442	449	Right-handed alpha
Helix 104	AL5	D	452	463	Right-handed alpha
Helix 105	AL6	D	471	481	Right-handed alpha
Helix 106	AL7	D	486	502	Right-handed alpha
Helix 107	AL8	E	8	37	Right-handed alpha
Helix 108	AL9	E	39	41	Right-handed 310
Helix 109	AM1	E	42	62	Right-handed alpha
Helix 110	AM2	E	63	75	Right-handed alpha
Helix 111	AM3	E	80	100	Right-handed alpha
Helix 112	AM4	E	101	123	Right-handed alpha
Helix 113	AM5	E	127	148	Right-handed alpha
Helix 114	AM6	E	154	164	Right-handed alpha
Helix 115	AM7	E	168	194	Right-handed alpha
Helix 116	AM8	E	198	203	Right-handed 310
Helix 117	AM9	E	206	222	Right-handed alpha
Helix 118	AN1	E	224	228	Right-handed 310
Helix 119	AN2	E	257	276	Right-handed alpha
Helix 120	AN3	E	291	304	Right-handed alpha
Helix 121	AN4	E	309	324	Right-handed alpha
Helix 122	AN5	E	332	340	Right-handed alpha
Helix 123	AN6	E	348	352	Right-handed 310
Helix 124	AN7	E	356	373	Right-handed alpha
Helix 125	AN8	E	377	379	Right-handed 310
Helix 126	AN9	E	380	394	Right-handed alpha
Helix 127	AO1	E	408	412	Right-handed 310
Helix 128	AO2	E	419	440	Right-handed alpha
Helix 129	AO3	E	442	449	Right-handed alpha
Helix 130	AO4	E	452	463	Right-handed alpha
Helix 131	AO5	E	471	481	Right-handed alpha
Helix 132	AO6	E	486	502	Right-handed alpha
Helix 133	AO7	F	4	37	Right-handed alpha
Helix 134	AO8	F	39	41	Right-handed 310
Helix 135	AO9	F	42	62	Right-handed alpha
Helix 136	AP1	F	63	76	Right-handed alpha
Helix 137	AP2	F	80	100	Right-handed alpha
Helix 138	AP3	F	101	123	Right-handed alpha
Helix 139	AP4	F	127	148	Right-handed alpha
Helix 140	AP5	F	154	164	Right-handed alpha
Helix 141	AP6	F	168	194	Right-handed alpha
Helix 142	AP7	F	198	203	Right-handed 310
Helix 143	AP8	F	206	222	Right-handed alpha
Helix 144	AP9	F	257	277	Right-handed alpha
Helix 145	AQ1	F	278	282	Right-handed 310
Helix 146	AQ2	F	291	304	Right-handed alpha
Helix 147	AQ3	F	309	324	Right-handed alpha
Helix 148	AQ4	F	324	329	Right-handed alpha
Helix 149	AQ5	F	332	340	Right-handed alpha
Helix 150	AQ6	F	348	352	Right-handed 310
Helix 151	AQ7	F	356	373	Right-handed alpha
Helix 152	AQ8	F	377	379	Right-handed 310
Helix 153	AQ9	F	380	394	Right-handed alpha
Helix 154	AR1	F	408	412	Right-handed 310
Helix 155	AR2	F	419	440	Right-handed alpha
Helix 156	AR3	F	442	449	Right-handed alpha
Helix 157	AR4	F	452	463	Right-handed alpha
Helix 158	AR5	F	471	481	Right-handed alpha
Helix 159	AR6	F	486	502	Right-handed alpha

There are 6 sheets in PDB entry 5GIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	245	250	parallel
Strand 3	A	238	242	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	245	250	parallel
Strand 3	B	238	242	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	245	250	parallel
Strand 3	C	238	242	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	232	first strand
Strand 2	D	245	250	parallel
Strand 3	D	238	242	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	232	first strand
Strand 2	E	245	250	parallel
Strand 3	E	238	242	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	232	first strand
Strand 2	F	245	250	parallel
Strand 3	F	238	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIV