Analysis of interatomic Contacts of Structural Units in PDB entry:
5GIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GIV entry

There are 3 chains in PDB entry 5GIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 7VAL 503
B
THR 3VAL 503
C
GLN 9ASP 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are159 helices in PDB entry 5GIV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
7 37Right-handed alpha
Helix 2
AA2
A
39 41Right-handed 310
Helix 3
AA3
A
42 63Right-handed alpha
Helix 4
AA4
A
63 76Right-handed alpha
Helix 5
AA5
A
80 100Right-handed alpha
Helix 6
AA6
A
101 123Right-handed alpha
Helix 7
AA7
A
127 148Right-handed alpha
Helix 8
AA8
A
154 164Right-handed alpha
Helix 9
AA9
A
168 194Right-handed alpha
Helix 10
AB1
A
198 203Right-handed 310
Helix 11
AB2
A
206 222Right-handed alpha
Helix 12
AB3
A
224 228Right-handed 310
Helix 13
AB4
A
257 276Right-handed alpha
Helix 14
AB5
A
291 304Right-handed alpha
Helix 15
AB6
A
309 324Right-handed alpha
Helix 16
AB7
A
332 340Right-handed alpha
Helix 17
AB8
A
348 352Right-handed 310
Helix 18
AB9
A
356 373Right-handed alpha
Helix 19
AC1
A
377 379Right-handed 310
Helix 20
AC2
A
380 394Right-handed alpha
Helix 21
AC3
A
408 412Right-handed 310
Helix 22
AC4
A
419 440Right-handed alpha
Helix 23
AC5
A
442 449Right-handed alpha
Helix 24
AC6
A
452 463Right-handed alpha
Helix 25
AC7
A
471 481Right-handed alpha
Helix 26
AC8
A
486 502Right-handed alpha
Helix 27
AC9
B
4 37Right-handed alpha
Helix 28
AD1
B
39 41Right-handed 310
Helix 29
AD2
B
42 62Right-handed alpha
Helix 30
AD3
B
63 75Right-handed alpha
Helix 31
AD4
B
80 100Right-handed alpha
Helix 32
AD5
B
101 123Right-handed alpha
Helix 33
AD6
B
127 148Right-handed alpha
Helix 34
AD7
B
154 164Right-handed alpha
Helix 35
AD8
B
168 194Right-handed alpha
Helix 36
AD9
B
198 203Right-handed 310
Helix 37
AE1
B
206 222Right-handed alpha
Helix 38
AE2
B
224 228Right-handed 310
Helix 39
AE3
B
257 276Right-handed alpha
Helix 40
AE4
B
291 304Right-handed alpha
Helix 41
AE5
B
309 324Right-handed alpha
Helix 42
AE6
B
332 340Right-handed alpha
Helix 43
AE7
B
348 352Right-handed 310
Helix 44
AE8
B
356 373Right-handed alpha
Helix 45
AE9
B
377 379Right-handed 310
Helix 46
AF1
B
380 394Right-handed alpha
Helix 47
AF2
B
408 412Right-handed 310
Helix 48
AF3
B
419 440Right-handed alpha
Helix 49
AF4
B
442 449Right-handed alpha
Helix 50
AF5
B
452 463Right-handed alpha
Helix 51
AF6
B
471 481Right-handed alpha
Helix 52
AF7
B
486 502Right-handed alpha
Helix 53
AF8
C
10 37Right-handed alpha
Helix 54
AF9
C
39 41Right-handed 310
Helix 55
AG1
C
42 62Right-handed alpha
Helix 56
AG2
C
63 75Right-handed alpha
Helix 57
AG3
C
80 100Right-handed alpha
Helix 58
AG4
C
101 123Right-handed alpha
Helix 59
AG5
C
127 148Right-handed alpha
Helix 60
AG6
C
154 164Right-handed alpha
Helix 61
AG7
C
168 194Right-handed alpha
Helix 62
AG8
C
198 203Right-handed 310
Helix 63
AG9
C
206 222Right-handed alpha
Helix 64
AH1
C
224 228Right-handed 310
Helix 65
AH2
C
257 277Right-handed alpha
Helix 66
AH3
C
278 282Right-handed 310
Helix 67
AH4
C
291 304Right-handed alpha
Helix 68
AH5
C
309 324Right-handed alpha
Helix 69
AH6
C
332 340Right-handed alpha
Helix 70
AH7
C
348 352Right-handed 310
Helix 71
AH8
C
356 373Right-handed alpha
Helix 72
AH9
C
377 379Right-handed 310
Helix 73
AI1
C
380 394Right-handed alpha
Helix 74
AI2
C
408 412Right-handed 310
Helix 75
AI3
C
419 440Right-handed alpha
Helix 76
AI4
C
442 449Right-handed alpha
Helix 77
AI5
C
452 463Right-handed alpha
Helix 78
AI6
C
471 481Right-handed alpha
Helix 79
AI7
C
486 502Right-handed alpha
Helix 80
AI8
D
8 37Right-handed alpha
Helix 81
AI9
D
39 41Right-handed 310
Helix 82
AJ1
D
42 62Right-handed alpha
Helix 83
AJ2
D
63 76Right-handed alpha
Helix 84
AJ3
D
80 100Right-handed alpha
Helix 85
AJ4
D
101 123Right-handed alpha
Helix 86
AJ5
D
127 148Right-handed alpha
Helix 87
AJ6
D
154 164Right-handed alpha
Helix 88
AJ7
D
168 194Right-handed alpha
Helix 89
AJ8
D
198 203Right-handed 310
Helix 90
AJ9
D
206 222Right-handed alpha
Helix 91
AK1
D
224 228Right-handed 310
Helix 92
AK2
D
257 277Right-handed alpha
Helix 93
AK3
D
278 282Right-handed 310
Helix 94
AK4
D
291 304Right-handed alpha
Helix 95
AK5
D
309 324Right-handed alpha
Helix 96
AK6
D
332 340Right-handed alpha
Helix 97
AK7
D
348 352Right-handed 310
Helix 98
AK8
D
356 373Right-handed alpha
Helix 99
AK9
D
377 379Right-handed 310
Helix 100
AL1
D
380 394Right-handed alpha
Helix 101
AL2
D
408 413Right-handed alpha
Helix 102
AL3
D
419 440Right-handed alpha
Helix 103
AL4
D
442 449Right-handed alpha
Helix 104
AL5
D
452 463Right-handed alpha
Helix 105
AL6
D
471 481Right-handed alpha
Helix 106
AL7
D
486 502Right-handed alpha
Helix 107
AL8
E
8 37Right-handed alpha
Helix 108
AL9
E
39 41Right-handed 310
Helix 109
AM1
E
42 62Right-handed alpha
Helix 110
AM2
E
63 75Right-handed alpha
Helix 111
AM3
E
80 100Right-handed alpha
Helix 112
AM4
E
101 123Right-handed alpha
Helix 113
AM5
E
127 148Right-handed alpha
Helix 114
AM6
E
154 164Right-handed alpha
Helix 115
AM7
E
168 194Right-handed alpha
Helix 116
AM8
E
198 203Right-handed 310
Helix 117
AM9
E
206 222Right-handed alpha
Helix 118
AN1
E
224 228Right-handed 310
Helix 119
AN2
E
257 276Right-handed alpha
Helix 120
AN3
E
291 304Right-handed alpha
Helix 121
AN4
E
309 324Right-handed alpha
Helix 122
AN5
E
332 340Right-handed alpha
Helix 123
AN6
E
348 352Right-handed 310
Helix 124
AN7
E
356 373Right-handed alpha
Helix 125
AN8
E
377 379Right-handed 310
Helix 126
AN9
E
380 394Right-handed alpha
Helix 127
AO1
E
408 412Right-handed 310
Helix 128
AO2
E
419 440Right-handed alpha
Helix 129
AO3
E
442 449Right-handed alpha
Helix 130
AO4
E
452 463Right-handed alpha
Helix 131
AO5
E
471 481Right-handed alpha
Helix 132
AO6
E
486 502Right-handed alpha
Helix 133
AO7
F
4 37Right-handed alpha
Helix 134
AO8
F
39 41Right-handed 310
Helix 135
AO9
F
42 62Right-handed alpha
Helix 136
AP1
F
63 76Right-handed alpha
Helix 137
AP2
F
80 100Right-handed alpha
Helix 138
AP3
F
101 123Right-handed alpha
Helix 139
AP4
F
127 148Right-handed alpha
Helix 140
AP5
F
154 164Right-handed alpha
Helix 141
AP6
F
168 194Right-handed alpha
Helix 142
AP7
F
198 203Right-handed 310
Helix 143
AP8
F
206 222Right-handed alpha
Helix 144
AP9
F
257 277Right-handed alpha
Helix 145
AQ1
F
278 282Right-handed 310
Helix 146
AQ2
F
291 304Right-handed alpha
Helix 147
AQ3
F
309 324Right-handed alpha
Helix 148
AQ4
F
324 329Right-handed alpha
Helix 149
AQ5
F
332 340Right-handed alpha
Helix 150
AQ6
F
348 352Right-handed 310
Helix 151
AQ7
F
356 373Right-handed alpha
Helix 152
AQ8
F
377 379Right-handed 310
Helix 153
AQ9
F
380 394Right-handed alpha
Helix 154
AR1
F
408 412Right-handed 310
Helix 155
AR2
F
419 440Right-handed alpha
Helix 156
AR3
F
442 449Right-handed alpha
Helix 157
AR4
F
452 463Right-handed alpha
Helix 158
AR5
F
471 481Right-handed alpha
Helix 159
AR6
F
486 502Right-handed alpha
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There are 6 sheets in PDB entry 5GIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
230 232first strand
Strand 2
A
245 250parallel
Strand 3
A
238 242anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
230 232first strand
Strand 2
B
245 250parallel
Strand 3
B
238 242anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
230 232first strand
Strand 2
C
245 250parallel
Strand 3
C
238 242anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
230 232first strand
Strand 2
D
245 250parallel
Strand 3
D
238 242anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
230 232first strand
Strand 2
E
245 250parallel
Strand 3
E
238 242anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
230 232first strand
Strand 2
F
245 250parallel
Strand 3
F
238 242anti-parallel
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