Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GJ7 entry

There are 2 chains in PDB entry 5GJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2GLN 395
B
 SER -2GLN 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 5GJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 6Right-handed alpha
Helix 2
AA2
A
11 39Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
53 57Right-handed 310
Helix 5
AA5
A
60 64Right-handed 310
Helix 6
AA6
A
69 84Right-handed alpha
Helix 7
AA7
A
84 105Right-handed alpha
Helix 8
AA8
A
108 123Right-handed alpha
Helix 9
AA9
A
166 170Right-handed 310
Helix 10
AB1
A
193 195Right-handed 310
Helix 11
AB2
A
243 246Right-handed 310
Helix 12
AB3
A
247 271Right-handed alpha
Helix 13
AB4
A
279 282Right-handed 310
Helix 14
AB5
A
283 314Right-handed alpha
Helix 15
AB6
A
315 322Right-handed alpha
Helix 16
AB7
A
322 349Right-handed alpha
Helix 17
AB8
A
350 354Right-handed 310
Helix 18
AB9
A
358 367Right-handed alpha
Helix 19
AC1
A
368 371Right-handed 310
Helix 20
AC2
A
375 394Right-handed alpha
Helix 21
AC3
B
1 6Right-handed alpha
Helix 22
AC4
B
11 39Right-handed alpha
Helix 23
AC5
B
42 53Right-handed alpha
Helix 24
AC6
B
54 57Right-handed 310
Helix 25
AC7
B
60 64Right-handed 310
Helix 26
AC8
B
69 84Right-handed alpha
Helix 27
AC9
B
84 105Right-handed alpha
Helix 28
AD1
B
108 123Right-handed alpha
Helix 29
AD2
B
166 170Right-handed 310
Helix 30
AD3
B
193 195Right-handed 310
Helix 31
AD4
B
243 246Right-handed 310
Helix 32
AD5
B
247 271Right-handed alpha
Helix 33
AD6
B
279 282Right-handed 310
Helix 34
AD7
B
283 314Right-handed alpha
Helix 35
AD8
B
315 322Right-handed alpha
Helix 36
AD9
B
322 349Right-handed alpha
Helix 37
AE1
B
350 354Right-handed 310
Helix 38
AE2
B
358 367Right-handed alpha
Helix 39
AE3
B
368 371Right-handed 310
Helix 40
AE4
B
375 394Right-handed alpha
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There are 4 sheets in PDB entry 5GJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
172 179parallel
Strand 3
A
147 151parallel
Strand 4
A
154 161anti-parallel
Strand 5
A
212 222anti-parallel
Strand 6
A
196 199anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
172 179parallel
Strand 3
A
185 191anti-parallel
Strand 4
A
226 230anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
172 179parallel
Strand 3
B
147 151parallel
Strand 4
B
154 161anti-parallel
Strand 5
B
212 222anti-parallel
Strand 6
B
196 199anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
172 179parallel
Strand 3
B
185 191anti-parallel
Strand 4
B
226 230anti-parallel
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