Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GJ9 entry

There are 2 chains in PDB entry 5GJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6LYS 303
B
 LYS 6LYS 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5GJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 16Right-handed 310
Helix 2
AA2
A
19 34Right-handed alpha
Helix 3
AA3
A
45 63Right-handed alpha
Helix 4
AA4
A
63 75Right-handed alpha
Helix 5
AA5
A
102 106Right-handed 310
Helix 6
AA6
A
110 140Right-handed alpha
Helix 7
AA7
A
144 152Right-handed alpha
Helix 8
AA8
A
170 174Right-handed 310
Helix 9
AA9
A
221 228Right-handed alpha
Helix 10
AB1
A
265 269Right-handed 310
Helix 11
AB2
A
280 291Right-handed alpha
Helix 12
AB3
A
295 302Right-handed alpha
Helix 13
AB4
B
13 17Right-handed 310
Helix 14
AB5
B
19 34Right-handed alpha
Helix 15
AB6
B
45 63Right-handed alpha
Helix 16
AB7
B
63 75Right-handed alpha
Helix 17
AB8
B
102 106Right-handed 310
Helix 18
AB9
B
110 140Right-handed alpha
Helix 19
AC1
B
144 152Right-handed alpha
Helix 20
AC2
B
170 174Right-handed 310
Helix 21
AC3
B
221 228Right-handed alpha
Helix 22
AC4
B
265 269Right-handed 310
Helix 23
AC5
B
280 291Right-handed alpha
Helix 24
AC6
B
295 302Right-handed alpha
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There are 6 sheets in PDB entry 5GJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
36 40parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
247 255anti-parallel
Strand 6
A
157 165anti-parallel
Strand 7
A
91 98anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
237 239anti-parallel
Strand 3
A
198 202anti-parallel
Strand 4
A
205 208anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
278 279anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
36 40parallel
Strand 3
B
216 220anti-parallel
Strand 4
B
186 191anti-parallel
Strand 5
B
247 255anti-parallel
Strand 6
B
157 165anti-parallel
Strand 7
B
91 98anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
237 239anti-parallel
Strand 3
B
198 202anti-parallel
Strand 4
B
205 208anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
278 279anti-parallel
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