Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GJA entry

There are 5 chains in PDB entry 5GJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 5	LYS 303
B	LYS 6	LYS 303
C	LYS 6	LYS 303
D	MET 5	LYS 303
E	LYS 6	CYS 63

There are 94 helices in PDB entry 5GJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	19	34	Right-handed alpha
Helix 3	AA3	A	45	64	Right-handed alpha
Helix 4	AA4	A	64	76	Right-handed alpha
Helix 5	AA5	A	102	106	Right-handed 310
Helix 6	AA6	A	110	140	Right-handed alpha
Helix 7	AA7	A	144	152	Right-handed alpha
Helix 8	AA8	A	170	173	Right-handed 310
Helix 9	AA9	A	221	228	Right-handed alpha
Helix 10	AB1	A	265	269	Right-handed 310
Helix 11	AB2	A	280	291	Right-handed alpha
Helix 12	AB3	A	295	302	Right-handed alpha
Helix 13	AB4	B	13	17	Right-handed 310
Helix 14	AB5	B	19	34	Right-handed alpha
Helix 15	AB6	B	45	75	Right-handed alpha
Helix 16	AB7	B	102	106	Right-handed 310
Helix 17	AB8	B	110	140	Right-handed alpha
Helix 18	AB9	B	144	152	Right-handed alpha
Helix 19	AC1	B	170	173	Right-handed 310
Helix 20	AC2	B	221	228	Right-handed alpha
Helix 21	AC3	B	265	269	Right-handed 310
Helix 22	AC4	B	280	291	Right-handed alpha
Helix 23	AC5	B	295	302	Right-handed alpha
Helix 24	AC6	C	13	17	Right-handed 310
Helix 25	AC7	C	19	34	Right-handed alpha
Helix 26	AC8	C	45	76	Right-handed alpha
Helix 27	AC9	C	102	106	Right-handed 310
Helix 28	AD1	C	110	140	Right-handed alpha
Helix 29	AD2	C	144	152	Right-handed alpha
Helix 30	AD3	C	170	173	Right-handed 310
Helix 31	AD4	C	221	228	Right-handed alpha
Helix 32	AD5	C	265	269	Right-handed 310
Helix 33	AD6	C	280	291	Right-handed alpha
Helix 34	AD7	C	295	302	Right-handed alpha
Helix 35	AD8	D	13	17	Right-handed 310
Helix 36	AD9	D	19	34	Right-handed alpha
Helix 37	AE1	D	45	64	Right-handed alpha
Helix 38	AE2	D	64	76	Right-handed alpha
Helix 39	AE3	D	102	106	Right-handed 310
Helix 40	AE4	D	110	140	Right-handed alpha
Helix 41	AE5	D	144	152	Right-handed alpha
Helix 42	AE6	D	170	173	Right-handed 310
Helix 43	AE7	D	221	228	Right-handed alpha
Helix 44	AE8	D	265	269	Right-handed 310
Helix 45	AE9	D	280	291	Right-handed alpha
Helix 46	AF1	D	295	302	Right-handed alpha
Helix 47	AF2	E	13	16	Right-handed 310
Helix 48	AF3	E	17	18	Right-handed 310
Helix 49	AF4	E	19	34	Right-handed alpha
Helix 50	AF5	E	45	64	Right-handed alpha
Helix 51	AF6	E	66	70	Right-handed 310
Helix 52	AF7	E	102	106	Right-handed 310
Helix 53	AF8	E	110	140	Right-handed alpha
Helix 54	AF9	E	144	152	Right-handed alpha
Helix 55	AG1	E	221	228	Right-handed alpha
Helix 56	AG2	E	265	269	Right-handed 310
Helix 57	AG3	E	280	290	Right-handed alpha
Helix 58	AG4	E	295	302	Right-handed alpha
Helix 59	AG5	F	13	16	Right-handed 310
Helix 60	AG6	F	18	34	Right-handed alpha
Helix 61	AG7	F	45	64	Right-handed alpha
Helix 62	AG8	F	64	75	Right-handed alpha
Helix 63	AG9	F	102	106	Right-handed 310
Helix 64	AH1	F	110	140	Right-handed alpha
Helix 65	AH2	F	144	152	Right-handed alpha
Helix 66	AH3	F	170	173	Right-handed 310
Helix 67	AH4	F	221	228	Right-handed alpha
Helix 68	AH5	F	265	269	Right-handed 310
Helix 69	AH6	F	280	291	Right-handed alpha
Helix 70	AH7	F	295	302	Right-handed alpha
Helix 71	AH8	G	13	16	Right-handed 310
Helix 72	AH9	G	19	34	Right-handed alpha
Helix 73	AI1	G	45	64	Right-handed alpha
Helix 74	AI2	G	64	76	Right-handed alpha
Helix 75	AI3	G	102	106	Right-handed 310
Helix 76	AI4	G	110	140	Right-handed alpha
Helix 77	AI5	G	144	152	Right-handed alpha
Helix 78	AI6	G	221	228	Right-handed alpha
Helix 79	AI7	G	265	269	Right-handed 310
Helix 80	AI8	G	280	291	Right-handed alpha
Helix 81	AI9	G	295	302	Right-handed alpha
Helix 82	AJ1	H	13	16	Right-handed 310
Helix 83	AJ2	H	17	18	Right-handed 310
Helix 84	AJ3	H	19	34	Right-handed alpha
Helix 85	AJ4	H	45	64	Right-handed alpha
Helix 86	AJ5	H	64	69	Right-handed alpha
Helix 87	AJ6	H	102	106	Right-handed 310
Helix 88	AJ7	H	110	140	Right-handed alpha
Helix 89	AJ8	H	144	152	Right-handed alpha
Helix 90	AJ9	H	170	172	Right-handed 310
Helix 91	AK1	H	221	228	Right-handed alpha
Helix 92	AK2	H	265	269	Right-handed 310
Helix 93	AK3	H	280	290	Right-handed alpha
Helix 94	AK4	H	295	302	Right-handed alpha

There are 24 sheets in PDB entry 5GJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	36	40	parallel
Strand 3	A	216	220	anti-parallel
Strand 4	A	186	191	anti-parallel
Strand 5	A	247	255	anti-parallel
Strand 6	A	157	165	anti-parallel
Strand 7	A	91	98	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	180	first strand
Strand 2	A	237	240	anti-parallel
Strand 3	A	198	202	anti-parallel
Strand 4	A	205	208	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	278	279	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	36	40	parallel
Strand 3	B	216	220	anti-parallel
Strand 4	B	186	191	anti-parallel
Strand 5	B	247	255	anti-parallel
Strand 6	B	157	165	anti-parallel
Strand 7	B	91	98	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	180	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	198	202	anti-parallel
Strand 4	B	205	208	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	278	279	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	36	40	parallel
Strand 3	C	216	220	anti-parallel
Strand 4	C	186	191	anti-parallel
Strand 5	C	247	255	anti-parallel
Strand 6	C	157	165	anti-parallel
Strand 7	C	91	98	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	180	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	198	202	anti-parallel
Strand 4	C	205	208	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	278	279	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	36	40	parallel
Strand 3	D	216	220	anti-parallel
Strand 4	D	186	191	anti-parallel
Strand 5	D	247	255	anti-parallel
Strand 6	D	157	165	anti-parallel
Strand 7	D	91	98	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	180	first strand
Strand 2	D	237	240	anti-parallel
Strand 3	D	198	202	anti-parallel
Strand 4	D	205	208	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	D	278	279	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	E	36	40	parallel
Strand 3	E	216	220	anti-parallel
Strand 4	E	186	191	anti-parallel
Strand 5	E	247	255	anti-parallel
Strand 6	E	157	165	anti-parallel
Strand 7	E	91	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	180	first strand
Strand 2	E	237	240	anti-parallel
Strand 3	E	198	202	anti-parallel
Strand 4	E	205	208	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	261	262	first strand
Strand 2	E	278	279	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	11	first strand
Strand 2	F	36	40	parallel
Strand 3	F	216	220	anti-parallel
Strand 4	F	186	191	anti-parallel
Strand 5	F	247	255	anti-parallel
Strand 6	F	157	165	anti-parallel
Strand 7	F	91	98	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	180	first strand
Strand 2	F	237	240	anti-parallel
Strand 3	F	198	202	anti-parallel
Strand 4	F	205	208	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	261	262	first strand
Strand 2	F	278	279	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	36	40	parallel
Strand 3	G	216	220	anti-parallel
Strand 4	G	186	191	anti-parallel
Strand 5	G	247	255	anti-parallel
Strand 6	G	157	165	anti-parallel
Strand 7	G	91	98	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	180	first strand
Strand 2	G	237	240	anti-parallel
Strand 3	G	198	202	anti-parallel
Strand 4	G	205	208	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	261	262	first strand
Strand 2	G	278	279	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	11	first strand
Strand 2	H	36	40	parallel
Strand 3	H	216	220	anti-parallel
Strand 4	H	186	191	anti-parallel
Strand 5	H	247	255	anti-parallel
Strand 6	H	157	165	anti-parallel
Strand 7	H	91	98	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	88	first strand
Strand 2	H	174	180	parallel
Strand 3	H	237	240	anti-parallel
Strand 4	H	198	202	anti-parallel
Strand 5	H	205	208	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	261	262	first strand
Strand 2	H	278	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJA