Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GJM entry

There are 2 chains in PDB entry 5GJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2THR 382
B
 MET 1LEU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5GJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
26 41Right-handed alpha
Helix 3
AA3
A
55 65Right-handed alpha
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
86 88Right-handed 310
Helix 6
AA6
A
98 108Right-handed alpha
Helix 7
AA7
A
117 126Right-handed alpha
Helix 8
AA8
A
155 157Right-handed 310
Helix 9
AA9
A
158 168Right-handed alpha
Helix 10
AB1
A
187 208Right-handed alpha
Helix 11
AB2
A
231 247Right-handed alpha
Helix 12
AB3
A
257 263Right-handed alpha
Helix 13
AB4
A
293 299Right-handed alpha
Helix 14
AB5
A
353 357Right-handed 310
Helix 15
AB6
A
359 363Right-handed 310
Helix 16
AB7
A
374 382Right-handed alpha
Helix 17
AB8
B
7 18Right-handed alpha
Helix 18
AB9
B
26 41Right-handed alpha
Helix 19
AC1
B
55 66Right-handed alpha
Helix 20
AC2
B
73 82Right-handed alpha
Helix 21
AC3
B
86 88Right-handed 310
Helix 22
AC4
B
98 108Right-handed alpha
Helix 23
AC5
B
118 128Right-handed alpha
Helix 24
AC6
B
158 169Right-handed alpha
Helix 25
AC7
B
186 206Right-handed alpha
Helix 26
AC8
B
231 247Right-handed alpha
Helix 27
AC9
B
257 262Right-handed alpha
Helix 28
AD1
B
291 293Right-handed 310
Helix 29
AD2
B
294 299Right-handed alpha
Helix 30
AD3
B
353 357Right-handed 310
Helix 31
AD4
B
359 363Right-handed 310
Helix 32
AD5
B
374 379Right-handed alpha
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There are 6 sheets in PDB entry 5GJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
265 275anti-parallel
Strand 4
A
282 285anti-parallel
Strand 5
A
314 319parallel
Strand 6
A
328 335anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
265 275anti-parallel
Strand 4
A
22 25anti-parallel
Strand 5
A
368 370parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
68 71parallel
Strand 3
A
90 92parallel
Strand 4
A
112 115parallel
Strand 5
A
132 137parallel
Strand 6
A
172 178parallel
Strand 7
A
213 215parallel
Strand 8
A
251 254parallel
Strand 9
A
44 49parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
343 346anti-parallel
Strand 3
B
265 275anti-parallel
Strand 4
B
282 285anti-parallel
Strand 5
B
314 319parallel
Strand 6
B
328 335anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
343 346anti-parallel
Strand 3
B
265 275anti-parallel
Strand 4
B
22 25anti-parallel
Strand 5
B
368 370parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
132 138parallel
Strand 3
B
172 177parallel
Strand 4
B
213 215parallel
Strand 5
B
251 254parallel
Strand 6
B
44 49parallel
Strand 7
B
68 71parallel
Strand 8
B
90 92parallel
Strand 9
B
112 115parallel
Strand 10
B
132 138parallel
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