Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GJN entry

There is 1 chain in PDB entry 5GJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5GJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
26 41Right-handed alpha
Helix 3
AA3
A
55 66Right-handed alpha
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
86 88Right-handed 310
Helix 6
AA6
A
98 108Right-handed alpha
Helix 7
AA7
A
117 119Right-handed 310
Helix 8
AA8
A
120 128Right-handed alpha
Helix 9
AA9
A
158 169Right-handed alpha
Helix 10
AB1
A
187 207Right-handed alpha
Helix 11
AB2
A
229 247Right-handed alpha
Helix 12
AB3
A
257 262Right-handed alpha
Helix 13
AB4
A
293 299Right-handed alpha
Helix 14
AB5
A
353 357Right-handed 310
Helix 15
AB6
A
359 363Right-handed 310
Helix 16
AB7
A
374 380Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5GJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
265 275anti-parallel
Strand 4
A
282 285anti-parallel
Strand 5
A
314 319parallel
Strand 6
A
328 335anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
265 275anti-parallel
Strand 4
A
22 25anti-parallel
Strand 5
A
368 370parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
132 138parallel
Strand 3
A
172 177parallel
Strand 4
A
213 215parallel
Strand 5
A
251 254parallel
Strand 6
A
44 49parallel
Strand 7
A
68 71parallel
Strand 8
A
90 92parallel
Strand 9
A
112 115parallel
Strand 10
A
132 138parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il