Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5GJP entry

There is 1 chain in PDB entry 5GJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5GJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
26 41Right-handed alpha
Helix 3
AA3
A
55 66Right-handed alpha
Helix 4
AA4
A
73 83Right-handed alpha
Helix 5
AA5
A
86 88Right-handed 310
Helix 6
AA6
A
98 108Right-handed alpha
Helix 7
AA7
A
119 128Right-handed alpha
Helix 8
AA8
A
158 169Right-handed alpha
Helix 9
AA9
A
187 207Right-handed alpha
Helix 10
AB1
A
231 247Right-handed alpha
Helix 11
AB2
A
257 262Right-handed alpha
Helix 12
AB3
A
291 293Right-handed 310
Helix 13
AB4
A
294 299Right-handed alpha
Helix 14
AB5
A
353 357Right-handed 310
Helix 15
AB6
A
359 363Right-handed 310
Helix 16
AB7
A
374 388Right-handed alpha
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There are 3 sheets in PDB entry 5GJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
265 275anti-parallel
Strand 4
A
282 285anti-parallel
Strand 5
A
314 319parallel
Strand 6
A
328 335anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
343 346anti-parallel
Strand 3
A
265 275anti-parallel
Strand 4
A
22 25anti-parallel
Strand 5
A
368 370parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
68 71parallel
Strand 3
A
90 92parallel
Strand 4
A
112 115parallel
Strand 5
A
132 136parallel
Strand 6
A
172 177parallel
Strand 7
A
213 215parallel
Strand 8
A
251 254parallel
Strand 9
A
44 49parallel
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