Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5GJW entry

There are 5 chains in PDB entry 5GJW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 32	ASP 1515
B	GLN 75	GLN 174
C	VAL 265	SER 461
E	MET 1	MET 216
F	PHE 29	CYS 1074

There are107 helices in PDB entry 5GJW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	49	Right-handed alpha
Helix 2	AA2	A	52	70	Right-handed alpha
Helix 3	AA3	A	81	108	Right-handed alpha
Helix 4	AA4	A	115	139	Right-handed alpha
Helix 5	AA5	A	162	172	Right-handed 310
Helix 6	AA6	A	173	179	Right-handed alpha
Helix 7	AA7	A	181	194	Right-handed alpha
Helix 8	AA8	A	195	197	Right-handed 310
Helix 9	AA9	A	199	218	Right-handed alpha
Helix 10	AB1	A	277	290	Right-handed alpha
Helix 11	AB2	A	294	305	Right-handed alpha
Helix 12	AB3	A	310	319	Right-handed alpha
Helix 13	AB4	A	322	343	Right-handed alpha
Helix 14	AB5	A	343	348	Right-handed alpha
Helix 15	AB6	A	348	374	Right-handed alpha
Helix 16	AB7	A	423	429	Right-handed alpha
Helix 17	AB8	A	431	436	Right-handed alpha
Helix 18	AB9	A	437	447	Right-handed alpha
Helix 19	AC1	A	458	485	Right-handed alpha
Helix 20	AC2	A	487	492	Right-handed alpha
Helix 21	AC3	A	494	515	Right-handed alpha
Helix 22	AC4	A	520	531	Right-handed alpha
Helix 23	AC5	A	532	538	Right-handed 310
Helix 24	AC6	A	544	581	Right-handed alpha
Helix 25	AC7	A	600	612	Right-handed alpha
Helix 26	AC8	A	615	628	Right-handed alpha
Helix 27	AC9	A	633	636	Right-handed 310
Helix 28	AD1	A	637	685	Right-handed alpha
Helix 29	AD2	A	789	797	Right-handed alpha
Helix 30	AD3	A	798	818	Right-handed alpha
Helix 31	AD4	A	826	852	Right-handed alpha
Helix 32	AD5	A	855	859	Right-handed 310
Helix 33	AD6	A	861	883	Right-handed alpha
Helix 34	AD7	A	894	899	Right-handed alpha
Helix 35	AD8	A	900	910	Right-handed 310
Helix 36	AD9	A	916	951	Right-handed alpha
Helix 37	AE1	A	999	1012	Right-handed alpha
Helix 38	AE2	A	1015	1025	Right-handed alpha
Helix 39	AE3	A	1038	1040	Right-handed 310
Helix 40	AE4	A	1041	1073	Right-handed alpha
Helix 41	AE5	A	1074	1078	Right-handed 310
Helix 42	AE6	A	1083	1095	Right-handed alpha
Helix 43	AE7	A	1105	1116	Right-handed alpha
Helix 44	AE8	A	1120	1134	Right-handed alpha
Helix 45	AE9	A	1143	1172	Right-handed alpha
Helix 46	AF1	A	1176	1179	Right-handed 310
Helix 47	AF2	A	1180	1205	Right-handed alpha
Helix 48	AF3	A	1230	1235	Right-handed alpha
Helix 49	AF4	A	1236	1241	Right-handed alpha
Helix 50	AF5	A	1242	1249	Right-handed 310
Helix 51	AF6	A	1250	1267	Right-handed alpha
Helix 52	AF7	A	1267	1287	Right-handed alpha
Helix 53	AF8	A	1308	1321	Right-handed alpha
Helix 54	AF9	A	1324	1330	Right-handed alpha
Helix 55	AG1	A	1356	1377	Right-handed alpha
Helix 56	AG2	A	1377	1388	Right-handed alpha
Helix 57	AG3	A	1396	1410	Right-handed alpha
Helix 58	AG4	A	1419	1428	Right-handed alpha
Helix 59	AG5	A	1442	1450	Right-handed alpha
Helix 60	AG6	A	1463	1475	Right-handed alpha
Helix 61	AG7	A	1481	1498	Right-handed alpha
Helix 62	AG8	A	1503	1515	Right-handed alpha
Helix 63	AG9	B	83	95	Right-handed alpha
Helix 64	AH1	B	161	174	Right-handed alpha
Helix 65	AH2	C	289	305	Right-handed alpha
Helix 66	AH3	C	317	321	Right-handed 310
Helix 67	AH4	C	343	358	Right-handed alpha
Helix 68	AH5	C	359	361	Right-handed 310
Helix 69	AH6	C	374	378	Right-handed 310
Helix 70	AH7	C	393	404	Right-handed alpha
Helix 71	AH8	C	405	410	Right-handed alpha
Helix 72	AH9	C	411	425	Right-handed alpha
Helix 73	AI1	C	438	458	Right-handed alpha
Helix 74	AI2	E	2	6	Right-handed alpha
Helix 75	AI3	E	7	29	Right-handed alpha
Helix 76	AI4	E	105	128	Right-handed alpha
Helix 77	AI5	E	136	164	Right-handed alpha
Helix 78	AI6	E	179	204	Right-handed alpha
Helix 79	AI7	F	31	54	Right-handed alpha
Helix 80	AI8	F	55	64	Right-handed alpha
Helix 81	AI9	F	77	112	Right-handed alpha
Helix 82	AJ1	F	180	188	Right-handed alpha
Helix 83	AJ2	F	191	202	Right-handed alpha
Helix 84	AJ3	F	239	242	Right-handed 310
Helix 85	AJ4	F	243	249	Right-handed alpha
Helix 86	AJ5	F	263	267	Right-handed 310
Helix 87	AJ6	F	268	282	Right-handed alpha
Helix 88	AJ7	F	283	285	Right-handed 310
Helix 89	AJ8	F	313	325	Right-handed alpha
Helix 90	AJ9	F	335	346	Right-handed alpha
Helix 91	AK1	F	371	379	Right-handed alpha
Helix 92	AK2	F	398	408	Right-handed alpha
Helix 93	AK3	F	420	425	Right-handed alpha
Helix 94	AK4	F	427	432	Right-handed alpha
Helix 95	AK5	F	433	438	Right-handed alpha
Helix 96	AK6	F	496	501	Right-handed alpha
Helix 97	AK7	F	562	567	Right-handed alpha
Helix 98	AK8	F	570	581	Right-handed alpha
Helix 99	AK9	F	642	652	Right-handed alpha
Helix 100	AL1	F	653	656	Right-handed 310
Helix 101	AL2	F	678	694	Right-handed alpha
Helix 102	AL3	F	703	722	Right-handed alpha
Helix 103	AL4	F	764	773	Right-handed alpha
Helix 104	AL5	F	820	833	Right-handed alpha
Helix 105	AL6	F	877	881	Right-handed 310
Helix 106	AL7	F	882	892	Right-handed alpha
Helix 107	AL8	F	1045	1050	Right-handed alpha

There are 20 sheets in PDB entry 5GJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	957	first strand
Strand 2	A	990	992	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	972	975	first strand
Strand 2	A	983	986	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1416	1418	first strand
Strand 2	A	1460	1462	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	133	138	anti-parallel
Strand 4	B	103	107	anti-parallel
Strand 5	C	268	271	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	280	first strand
Strand 2	C	385	389	parallel
Strand 3	C	432	434	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	314	first strand
Strand 2	C	363	368	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	81	first strand
Strand 2	E	56	59	anti-parallel
Strand 3	E	48	50	anti-parallel
Strand 4	E	33	36	anti-parallel
Strand 5	E	175	178	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	632	633	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	160	161	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	219	first strand
Strand 2	F	208	211	anti-parallel
Strand 3	F	488	495	anti-parallel
Strand 4	F	460	468	anti-parallel
Strand 5	F	447	448	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	219	first strand
Strand 2	F	208	211	anti-parallel
Strand 3	F	488	495	anti-parallel
Strand 4	F	460	468	anti-parallel
Strand 5	F	452	453	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	F	357	362	parallel
Strand 3	F	258	259	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	255	first strand
Strand 2	F	357	362	parallel
Strand 3	F	385	391	parallel
Strand 4	F	413	415	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	587	595	first strand
Strand 2	F	602	610	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	612	613	first strand
Strand 2	F	621	622	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	664	first strand
Strand 2	F	743	746	anti-parallel
Strand 3	F	734	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	795	796	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	661	664	first strand
Strand 2	F	743	746	anti-parallel
Strand 3	F	734	739	anti-parallel
Strand 4	F	813	819	anti-parallel
Strand 5	F	799	800	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	862	865	first strand
Strand 2	F	852	856	anti-parallel
Strand 3	F	1017	1022	anti-parallel
Strand 4	F	1003	1010	anti-parallel
Strand 5	F	993	998	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	896	902	first strand
Strand 2	F	979	985	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	906	907	first strand
Strand 2	F	975	976	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5GJW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5GJW